Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27]
2,836 sequences; 317,690,795 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq30 87.8 2e-12
>seq30
Length=3857846
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299
||||||||||| || || | |||||||| | ||||||||| |||| |||||| ||
Sbjct 1771996 ATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATG 1772055
Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359
|| ||||| || ||||| || ||||||||||| ||||| || | || |||||
Sbjct 1772056 GCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCGACTACACGTTCG 1772115
Query 14360 CCAAACG--ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417
||||| ||| | || | | ||||| ||| ||||| | || || || || |
Sbjct 1772116 GGAAACGTAGCGCTCTCATGATTG--ATCCAGTTTAATGCCCAATTAGCCTTCTTCTTGA 1772173
Query 14418 TAAAATCCATTGTTTCAATAGCATTAAATAA 14448
| || | ||| ||||| |||||||||||
Sbjct 1772174 CACAAGGAAGTGTCTCAATCGCATTAAATAA 1772204
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/193 (70%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 14443 AAATAAATG-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501
||||| || || ||| ||||| | | ||||| || || ||||| || || ||||
Sbjct 1773189 AAATATATTCTTACTTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAGTACA 1773248
Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561
| ||||| || || ||||| || || || ||||| ||||| ||||| | ||||| ||
Sbjct 1773249 TCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGAAA 1773308
Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621
|| || ||| | ||||| || | ||| |||||||| |||||||| ||| |
Sbjct 1773309 TTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAAGCGG 1773368
Query 14622 CAAAAAATGCCAA 14634
|||||||||| ||
Sbjct 1773369 CAAAAAATGCTAA 1773381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482328500848480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |