Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq14 127 2e-24 seq30 96.9 3e-15 >seq14 Length=6127344 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || ||||||||||| || || ||||| |||||| | || |||||| | || Sbjct 6014214 CATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 6014155 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || ||| | || ||||| || || | || || ||||| Sbjct 6014154 TGACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCA 6014095 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||| | || || ||||| ||||||||||||||| | ||| | ||| || || Sbjct 6014094 GCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAA 6014035 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| |||||||| || ||||||||||| || Sbjct 6014034 CATTCAGAAAGAATCCACGCTTCATCTGGTTCT 6014002 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || ||||| || ||| |||| || ||| | || Sbjct 6013985 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 6013926 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| |||||| || || | || || || || Sbjct 6013925 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 6013866 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| |||||||| |||||||| | ||| | ||| || ||| Sbjct 6013865 CAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAAC 6013806 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || ||||| ||||| || Sbjct 6013805 ATTCAGAAAGAATCCACGCTTCACCTGGTTCT 6013774 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || ||||| || ||| |||| || ||| | || Sbjct 6013757 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 6013698 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| |||||| || || | || || || || Sbjct 6013697 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 6013638 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| |||||||| ||||||| | ||| | ||||| ||| Sbjct 6013637 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 6013578 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 || ||||||||||| || || || Sbjct 6013577 ATCCAAAAAGAATCCACACTCCA 6013555 >seq30 Length=3857846 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 57671 GAGAAA--TTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||||| |||||| || || || || ||||| ||||| ||||||||||| ||||| Sbjct 1773405 GAGAAACGTTTTATCTCTCATGTTTTAGCATTTTTTGCCGCTTCCGATGGTATCGTTAAT 1773346 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 |||||| | | || ||||| ||||||||| || | | || || | || || || Sbjct 1773345 GAGAATCTAATTGAGAGATTCAGCCAAGAAGTGAAAATTTCCGAAGCACGTTGTTTCTAT 1773286 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || |||||| | ||||| ||||| | ||||| || ||||| || | ||||| || || Sbjct 1773285 GGCTTTCAAATTGCCATAGAAAATATTCATTCTGAGATGTACTCTTTGCTCATTGAAACT 1773226 Query 57849 TA 57850 || Sbjct 1773225 TA 1773224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750597581120