Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq73 109 7e-19 seq54 95.1 2e-14 >seq73 Length=1005568 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | ||| ||||| |||||||||||||| ||||| || ||||| || |||| Sbjct 745041 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 744982 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | |||||||| |||||||| || | ||| ||||| |||| ||||||| | | |||| Sbjct 744981 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 744922 Query 64126 ATTCTACCGTTGTTACTCCA 64145 |||| ||||| |||||| Sbjct 744921 ATTCGCTTGTTGTCACTCCA 744902 >seq54 Length=1719504 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| ||| || ||||||||||||||||| |||| | | ||||| || ||||| | Sbjct 1010427 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 1010368 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 1010367 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 1010308 Query 64126 ATTCTACCGTTGTTACTCCATTATATA 64152 | || || ||||||||| ||||| Sbjct 1010307 GTATAACTGTAGTTACTCCAGAATATA 1010281 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/259 (69%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 63702 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 || ||| || || || ||| || || || || || || || || || |||||| Sbjct 1010843 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 1010785 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || || || || | ||| ||||| || ||||| || || || || || || ||||| Sbjct 1010784 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 1010725 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 63878 || || ||| | | || | ||||||||||||| ||| || || ||||| || || Sbjct 1010724 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 1010667 Query 63879 TCGTAAATAATAACCGAAT 63897 ||||| || ||| | |||| Sbjct 1010666 TCGTATATTATAGCAGAAT 1010648 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| || || || | ||||| ||| ||||||| ||| || | ||| || || Sbjct 1012639 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 1012580 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | ||||||||||||||||| | || || ||||| || ||||||||||| Sbjct 1012579 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 1012520 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | || || || ||||| ||||| || || || || || || ||||||||||| | || Sbjct 1012519 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 1012460 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | | |||||| | |||| | | ||| || |||| | | ||||||| ||| | | Sbjct 1012459 AGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATAAA 1012400 Query 62565 TCCGACGGT 62573 | | |||| Sbjct 1012399 TTTGTCGGT 1012391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795272966080