Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq54 158 1e-33 seq30 93.3 4e-14 >seq54 Length=1719504 Score = 158 bits (174), Expect = 1e-33 Identities = 204/280 (73%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 ||||| || || | | ||| | | |||||| ||| |||| || || |||||||| Sbjct 1012639 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 1012580 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 |||| ||| |||||||| ||||| | || |||||||||||| ||||| |||||| Sbjct 1012579 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 1012520 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 ||||| || || || | ||| || || | || || || || ||||| |||||||||| | Sbjct 1012519 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 1012460 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 || |||||| | ||| ||| | || || ||| | ||||| ||||||||||||| Sbjct 1012459 AGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATAAA 1012400 Query 37315 TCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAAT 37352 | ||| || || | || ||||||||||||||| ||||| Sbjct 1012399 TTTGTCGGTTTAACGTT--CCACATATCATATTGAAGAAT 1012362 Score = 109 bits (120), Expect = 5e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 || ||||||| || || || |||||| | || || ||| |||||||||||||||||| Sbjct 1010876 GCATTAAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATTATATGTT 1010817 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 ||||| || | ||| || ||| | |||||||| | || ||| ||||| | ||||||| Sbjct 1010816 TCTATGACTTTATCAATGTCATTTTCATGAATACCAACAGCTACTCTCATCAACATATGT 1010757 Query 38539 TGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTT 38598 || || || || | ||| ||| ||| ||| || || || | | || | ||||| Sbjct 1010756 TGAGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTA 1010697 Query 38599 ATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634 | |||| |||| |||| ||| |||| | ||||||| Sbjct 1010696 AAACCAATATAATTATAATTGA--AATCACGATCGTAT 1010661 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTT---AGCTAGT 37410 |||||||| |||| | | | ||||| ||| |||| || | ||| ||||| | Sbjct 1012293 CCTTTACTGACTGGGCTACCTTGATATGACTCGTAAGTACCCT---TTTCCGCAGCTAAT 1012237 Query 37411 TCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATT 37470 |||||||||| ||||| ||| ||||||| | ||||||||| |||| || || | | | Sbjct 1012236 TCGCAACTAGCTTCTAAGGCGCCATAATAAAGTGTTTCGAAGATTTTAATGTTGAGTTCT 1012177 Query 37471 TTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGA 37530 || |||| || ||| ||||| | ||| | || ||| | ||| |||| || | ||| || Sbjct 1012176 TTCGCTTTTTTGCTCTCGAAGGGATATCGCATTAACAGGAACGCATCGGCTAGACCTTGT 1012117 Query 37531 ACACCGATACCTA 37543 | || ||||||| Sbjct 1012116 ATTCCTATACCTA 1012104 >seq30 Length=3857846 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 ||||| || |||||||||||||| || || |||||||| ||||||||||| ||||| || Sbjct 1773245 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 1773304 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 ||| | || || ||||| || || ||||||||| || |||||||| | Sbjct 1773305 GAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAA 1773364 Query 12041 GATGCAAAAAATGCTA 12056 | ||||||||||||| Sbjct 1773365 GCGGCAAAAAATGCTA 1773380 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 11417 TTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAAT 11476 || |||||||| || |||||| | ||||| | |||||||| ||||| || ||| Sbjct 1771659 TTTTATACATT----ACCTTTTCAAATCCTAATGCAACGAATAATCTGTCTGCAACAAAT 1771714 Query 11477 TCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACT 11536 || || || | | |||| || | |||||| ||||| || || ||||| | || Sbjct 1771715 TCGATGTAATTACACATGAATGTGCGATTCATTCCTATTAGTTCAACCGGCAATGCTTGC 1771774 Query 11537 GTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTA 11596 |||||||| |||||||| || | || || || || | || || | | | || Sbjct 1771775 GTCAAAAATTCCTTTTCAATTTCTACGGCGTCCATTACAATTGATTTCACACGCTCAAAC 1771834 Query 11597 GATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 ||||| |||| | ||||||||||||||||| || ||||| |||||||| || Sbjct 1771835 GATGGCTTTTGTACGATGTGTTTAAACATTAAACAGGCGAAATCGCAATGTAATCC 1771890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468508190795840