Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq54 132 7e-26 seq73 113 6e-20 >seq54 Length=1719504 Score = 132 bits (146), Expect = 7e-26 Identities = 196/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| || ||||| | ||||| ||| ||||||| ||| || | ||| ||||| Sbjct 1012639 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 1012580 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | |||||||||||||||||| | || || ||||| || ||||| ||||| Sbjct 1012579 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 1012520 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | ||||| || ||||| ||||| || || || || ||||||||||||||||| | || Sbjct 1012519 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 1012460 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | | |||||| | |||| | ||| || |||| | ||||||||||| | | Sbjct 1012459 AGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATAAA 1012400 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 | | ||| ||| ||||| | ||||||||| ||||| Sbjct 1012399 TTTGTCGGTTTAACGTTCCACATATCATATTGAAGAAT 1012362 Score = 109 bits (120), Expect = 8e-19 Identities = 186/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || ||| |||| ||| || || || || || || || || || |||||| Sbjct 1010843 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAATA 1010784 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || || || || | ||| ||||| || ||||| || || || ||||| ||| |||||| Sbjct 1010783 CCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTC 1010724 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 80551 | || |||| | | || | ||||||||||||| ||| || || ||||| || || | Sbjct 1010723 AGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGAT 1010666 Query 80552 CGTAAATAATAACCGAGTTGAGTTTATC 80579 |||| || ||| | || | ||||| || Sbjct 1010665 CGTATATTATAGCAGAATCCAGTTTCTC 1010638 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| ||| || ||||||||||||||||| |||||| | ||||| || |||| | Sbjct 1010427 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 1010368 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 1010367 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 1010308 Query 80798 ATTCTACCGTTGTTACTCCATTATATA 80824 | || || ||||||||| ||||| Sbjct 1010307 GTATAACTGTAGTTACTCCAGAATATA 1010281 >seq73 Length=1005568 Score = 113 bits (124), Expect = 6e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | ||| ||||| |||||||||||||| |||| || ||||| || ||||| Sbjct 745041 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 744982 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||||||||||||||| || | ||| ||||| |||| ||||||| | | |||| Sbjct 744981 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 744922 Query 80798 ATTCTACCGTTGTTACTCCA 80817 |||| ||||| |||||| Sbjct 744921 ATTCGCTTGTTGTCACTCCA 744902 Score = 93.3 bits (102), Expect = 6e-14 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 79306 TCATAAGGTCCTTCCTTTTCG---GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 |||||||| |||| |||| |||| ||| ||||| || |||| || || ||||| Sbjct 746835 TCATAAGGACCTT---TTTCAATAGCTATTTCGCAACTGGCTTCTAGAGCGCCATAATAG 746779 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTT 79422 | || || ||||| | | || || || | |||||| ||| ||||||||||| | Sbjct 746778 AGAGTCTCAAAAATTTGAATGTTAAGTTCATTAGCTTCTTTGCTTTCAAATGGATATCTC 746719 Query 79423 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | |||||| || |||||||||||||| ||||||||||| Sbjct 746718 ATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACC 746678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718243337371040