Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq30 86.0 6e-12 >seq30 Length=3857846 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 ||||||||||| || || | |||||||| | ||||||||| |||| |||||| || Sbjct 1771996 ATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATG 1772055 Query 13968 GCAGC--AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 || || || || | | | ||||| || ||||||||||| ||||| || | || |||| Sbjct 1772056 GCTGCGAAACTGCCACTG--AAGAAGATACCCTCAACTGCCGCAAATGCGACTACACGTT 1772113 Query 14026 CTCCAAACG--ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttttt 14083 | ||||| ||| | || | | ||||| ||| ||||| | || || || || Sbjct 1772114 CGGGAAACGTAGCGCTCTCATGATTG--ATCCAGTTTAATGCCCAATTAGCCTTCTTCTT 1772171 Query 14084 AATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | | || | ||| ||||| ||||||||||| Sbjct 1772172 GACACAAGGAAGTGTCTCAATCGCATTAAATAA 1772204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 14111 AAATAAATA-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 ||||| || || ||| ||||| | | ||||| || || ||||| || || |||| Sbjct 1773189 AAATATATTCTTACTTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAGTACA 1773248 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 | ||||| || || ||||| || || || ||||| ||||| || || | ||||| || Sbjct 1773249 TCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGAAA 1773308 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 || ||||| | ||||| || | ||| |||||||| |||||||| ||| | Sbjct 1773309 TTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAAGCGG 1773368 Query 14290 CAAAAAATGCCAA 14302 |||||||||| || Sbjct 1773369 CAAAAAATGCTAA 1773381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479710993642400