Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq30 82.4 7e-11 >seq30 Length=3857846 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755 ||||||||||| || || | |||||||| | ||||||||| |||| |||||| || Sbjct 1771996 ATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATG 1772055 Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815 || ||||| || ||||| || ||||||||||| ||||| || | || ||||| Sbjct 1772056 GCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCGACTACACGTTCG 1772115 Query 13816 CCAAACG--ATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 ||||| ||| | || ||| ||||| ||| ||||| | || || || || | Sbjct 1772116 GGAAACGTAGCGCTCTCATGATTG--ATCCAGTTTAATGCCCAATTAGCCTTCTTCTTGA 1772173 Query 13874 TAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | || | ||| || || ||||| ||||| Sbjct 1772174 CACAAGGAAGTGTCTCAATCGCATTAAATAA 1772204 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 || ||| ||||| | | ||||| || || ||||| || || ||||| ||||| || Sbjct 1773199 TTACTTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAGTACATCTCAGAATG 1773258 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 || |||||||| || || ||||| ||||| ||||| | ||||| || || || || Sbjct 1773259 AATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGAAATTTTCACTTC 1773318 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | ||||| || | || |||||||| |||||||| ||| ||||||||||| Sbjct 1773319 TTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAAGCGGCAAAAAATGC 1773378 Query 14088 CAA 14090 || Sbjct 1773379 TAA 1773381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478571834027040