Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq14 109 4e-19 seq4 87.8 1e-12 >seq14 Length=6127344 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| |||| ||| || || |||| ||| || ||||| | |||||||| || Sbjct 6013531 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 6013590 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| |||||||||||| ||||||| ||||||||||| | || Sbjct 6013591 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 6013650 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| || | || || | | | ||||| ||| ||||| Sbjct 6013651 ATTCCCTCTTTGTC-CTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 6013709 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || ||||||||||| |||||||||||| Sbjct 6013710 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013758 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| ||||| | || | | || ||||||||||||||||| ||||||| |||||| Sbjct 6013807 TTGTAGTCGGAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGT 6013866 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTC 43049 ||||| | || | || ||||| || ||| || | || || | | | ||||| Sbjct 6013867 TGATCCGGTGGAATTCCCTCTTTGTC-CTGAATTTTGGCCTTTACGTTTTCGATGGTGTC 6013925 Query 43050 GCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| ||||| || | || || ||||| || || ||||||||||| ||||||||||| Sbjct 6013926 TGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 Query 43110 T 43110 | Sbjct 6013986 T 6013986 >seq4 Length=9433735 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | |||||||||||||| || ||| | || |||| ||||||||||| || || Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 | |||||||||||| | ||| | || || || || |||| | ||||| | | Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 6954633 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | || || ||||| || || | || || ||||| || || || |||||||| || Sbjct 6954632 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 6954573 Query 43102 ATTTGCAT 43109 || ||||| Sbjct 6954572 ATCTGCAT 6954565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381356418436488