Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq73 109 7e-19 seq54 109 7e-19 seq30 100 4e-16 >seq73 Length=1005568 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | ||| ||||| |||||||||||||| |||| || ||||| || |||| Sbjct 745041 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 744982 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||||||||||||||| || | ||| ||||| |||| ||||||| | | |||| Sbjct 744981 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 744922 Query 72881 ATTCTACCGTTGTTACTCCA 72900 |||| ||||| |||||| Sbjct 744921 ATTCGCTTGTTGTCACTCCA 744902 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469 |||| ||| ||||| || |||| || |||||||| | || || ||||| | | || Sbjct 746814 GCTATTTCGCAACTGGCTTCTAGAGCGCCATAATAGAGAGTCTCAAAAATTTGAATGTTA 746755 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 || || | ||||| ||| ||||||||||| | | | |||||| || ||||||||| Sbjct 746754 AGTTCATTAGCTTCTTTGCTTTCAAATGGATATCTCATTAAAATAAATGCATCTGCTAAT 746695 Query 71530 CCTTGAACGCCAATACC 71546 ||||| || |||||||| Sbjct 746694 CCTTGTACACCAATACC 746678 >seq54 Length=1719504 Score = 109 bits (120), Expect = 7e-19 Identities = 186/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || ||| |||| ||| || || || || || || || || || ||| || Sbjct 1010843 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAATA 1010784 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 || || || || | ||| |||||||| ||||| || || || ||||| ||| |||||| Sbjct 1010783 CCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTC 1010724 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 72634 | || ||| | | || | ||||||||||||| ||| || || ||||| || || | Sbjct 1010723 AGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGAT 1010666 Query 72635 CGTAAATAATAACCGAATTGAGTTTATC 72662 |||| || ||| | |||| ||||| || Sbjct 1010665 CGTATATTATAGCAGAATCCAGTTTCTC 1010638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| ||| || ||||||||||||||||| |||||| | ||||| || ||||| | Sbjct 1010427 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 1010368 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 1010367 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 1010308 Query 72881 ATTCTACCGTTGTTACTCCATTATATA 72907 | || || ||||||||| ||||| Sbjct 1010307 GTATAACTGTAGTTACTCCAGAATATA 1010281 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 71080 tttttGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 || || || ||||| | ||||| ||| ||||||| ||| || | ||| ||||| Sbjct 1012639 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 1012580 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || | |||||||||||||||||| | | || ||||| || ||||||||||| Sbjct 1012579 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 1012520 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | || || || ||||| ||||| || || || || || || ||||||||||| | || Sbjct 1012519 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 1012460 Query 71260 AGACTATTTCT 71270 ||| |||||| Sbjct 1012459 AGAGAATTTCT 1012449 >seq30 Length=3857846 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||||| |||||||| || ||| | |||||||||||||| | |||||||||| | Sbjct 1773621 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTCCCAGATATCAGG 1773680 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 ||| ||||| |||||||| ||||| | ||||| Sbjct 1773681 ATACTGAATAGGGAAAATTACAAAACGGTTTGG 1773713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671115408115360