Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27]
2,836 sequences; 317,690,795 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq14 174 1e-38
seq3 102 6e-17
>seq14
Length=6127344
Score = 174 bits (192), Expect = 1e-38
Identities = 168/216 (78%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207
|| ||||||||| || || ||||| |||||||| ||||||||||| ||| |||| |
Sbjct 6013542 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 6013601
Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267
||||| | ||||||||| ||| | |||| ||| ||||| || ||||||||| |||||
Sbjct 6013602 ATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTT 6013661
Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
||| ||||||| |||||| |||| ||||| || | ||| || || | ||||||
Sbjct 6013662 GTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAAT 6013721
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||||| || |||||||| || |||||||||||
Sbjct 6013722 GGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757
Score = 163 bits (180), Expect = 2e-35
Identities = 158/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||| ||||| ||||| || |||||||| ||| ||| |||| | ||||| ||||||
Sbjct 6013783 TGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAATTGT 6013842
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
||||| ||| | |||| ||| ||||| || ||||||||| |||||||| |||||||
Sbjct 6013843 TTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTG 6013902
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|||||| |||| ||||| || | ||| || || | ||||||||||||||| ||
Sbjct 6013903 GCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTG 6013962
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|||||||| || |||||||||||
Sbjct 6013963 AGAGTTTTCACGAAAATTTGCAT 6013985
Score = 140 bits (154), Expect = 2e-28
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| ||||| ||||| || |||||||| ||| ||| |||| |||||||
Sbjct 6014004 AACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTC 6014063
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|| ||||| ||||| | ||||||||||| ||||| ||||| || ||||||||
Sbjct 6014064 CAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCCTCTTTGTCTTG 6014123
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
|| || ||| |||||| ||||||| || || | ||| || || | ||| || ||||
Sbjct 6014124 GATCTTAGCT-TTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGATAGTTT 6014182
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||| || ||||| |||||||| || |||||
Sbjct 6014183 TACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213
Score = 113 bits (124), Expect = 3e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| || || || || || |||||||| || ||| |||| | || ||
Sbjct 6014232 AACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTC 6014291
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|| ||| || ||||| | |||||||||||||| || ||||| |||||||| ||
Sbjct 6014292 TAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTG 6014351
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
|| || ||| || ||| |||| || || || | ||| || || | ||| |||||||
Sbjct 6014352 GATCTTAGCT-TTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTT 6014410
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || || || ||||||||||| ||||||||
Sbjct 6014411 TTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441
>seq3
Length=10655775
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|||| ||| | ||||| ||||| || ||||| ||||| || | | |||||||
Sbjct 2297766 ACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCA 2297825
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| |||||| ||||| | ||||| | || || || || |||||||||||||| |
Sbjct 2297826 AGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGA 2297885
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| ||| ||| |||| || || || || || || || |||||||| ||
Sbjct 2297886 ATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTT 2297945
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||||| ||||| ||||| || |||||
Sbjct 2297946 CCTGTCAGGGTTTTGACAAAGATCTGCAT 2297974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362166681728676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |