Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq14 174 1e-38 seq3 102 6e-17 >seq14 Length=6127344 Score = 174 bits (192), Expect = 1e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| || || ||||| |||||||| ||||||||||| ||| |||| | Sbjct 6013542 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 6013601 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||||||||| ||| | |||| ||| ||||| || ||||||||| ||||| Sbjct 6013602 ATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTT 6013661 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| ||||||| |||||| |||| ||||| || | ||| || || | |||||| Sbjct 6013662 GTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAAT 6013721 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| || |||||||| || ||||||||||| Sbjct 6013722 GGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757 Score = 163 bits (180), Expect = 2e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || |||||||| ||| ||| |||| | ||||| |||||| Sbjct 6013783 TGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAATTGT 6013842 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| ||||| || ||||||||| |||||||| ||||||| Sbjct 6013843 TTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTG 6013902 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| |||| ||||| || | ||| || || | ||||||||||||||| || Sbjct 6013903 GCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTG 6013962 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || ||||||||||| Sbjct 6013963 AGAGTTTTCACGAAAATTTGCAT 6013985 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| ||||| || |||||||| ||| ||| |||| ||||||| Sbjct 6014004 AACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTC 6014063 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || ||||| ||||| | ||||||||||| ||||| ||||| || |||||||| Sbjct 6014064 CAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCCTCTTTGTCTTG 6014123 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| |||||| ||||||| || || | ||| || || | ||| || |||| Sbjct 6014124 GATCTTAGCT-TTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGATAGTTT 6014182 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || ||||| |||||||| || ||||| Sbjct 6014183 TACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || |||||||| || ||| |||| | || || Sbjct 6014232 AACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTC 6014291 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || ||| || ||||| | |||||||||||||| || ||||| |||||||| || Sbjct 6014292 TAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTG 6014351 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| |||| || || || | ||| || || | ||| ||||||| Sbjct 6014352 GATCTTAGCT-TTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTT 6014410 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || ||||||||||| |||||||| Sbjct 6014411 TTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 >seq3 Length=10655775 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||| | ||||| ||||| || ||||| ||||| || | | ||||||| Sbjct 2297766 ACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCA 2297825 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | ||||| | || || || || |||||||||||||| | Sbjct 2297826 AGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGA 2297885 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| || || || || || || || |||||||| || Sbjct 2297886 ATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTT 2297945 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| ||||| || ||||| Sbjct 2297946 CCTGTCAGGGTTTTGACAAAGATCTGCAT 2297974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362166681728676