Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 104 1e-17 seq14 89.7 3e-13 >seq3 Length=10655775 Score = 104 bits (114), Expect = 1e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || || || ||||| |||||||||||||||||| | || || ||| Sbjct 2297994 ACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCATCTTCC 2298053 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||||||| ||| || ||||| ||||| || | || ||||||||||| || Sbjct 2298054 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGG 2298113 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| | | || ||||| | | ||| || |||||||| || || Sbjct 2298114 ATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 2298173 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || | || || |||||||| |||||| Sbjct 2298174 CCGGTCAATGTCTTCACGAAAATCTGCATG 2298203 >seq14 Length=6127344 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG- 33213 |||| |||| ||| | || || ||||| || || ||||| || || | ||||| Sbjct 6013999 CGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAA----GAGTTCT 6014054 Query 33214 ---GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 ||| ||||| || || ||| ||| || |||||||||||||| | || || || || Sbjct 6014055 GCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCCTC 6014114 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| |||||| ||| || ||||| | || ||| || || || Sbjct 6014115 TTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGT 6014174 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| ||||||||||| ||||| || || |||||| Sbjct 6014175 GATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 6014214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318766581850728