Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq2 217 8e-52 >seq2 Length=14943759 Score = 217 bits (240), Expect = 8e-52 Identities = 372/533 (70%), Gaps = 10/533 (2%) Strand=Plus/Minus Query 3617 AATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATG 3676 || |||||| |||| || || || || || |||||||||||||||||||| ||||| || Sbjct 790647 AACGAATTGCTATACTTCGCAGATGTGTGTGCTGGTCCAGGTGGTTTCAGCGAATACATT 790588 Query 3677 TTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaa--aaaaTG 3734 || | | |||||| ||| || |||||| | ||| | || || | ||| |||||| Sbjct 790587 TTGTCAAAAAAGAAGTGGCATGCCAAAGGATTTGGATTCACTTT--GAAAAACGAAAATG 790530 Query 3735 ATTTTCAACTGAACAGATTTTACGAT--AACTTTTCGGAAACTTTACACCCGTATTATGG 3792 ||||| | || | || | || | | | | | |||||||| || |||| |||||| Sbjct 790529 ATTTTTCATTGGATGACTTCTTCGCTGGACCATGT--GAAACTTTCCATCCGTTTTATGG 790472 Query 3793 TCCGCTTA-ACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGA 3851 | || | || | || ||| | | | | |||||||| | | ||| | || Sbjct 790471 -CAGCAAAGACAACGGAAATGTATTTGACGCGCAAAATCAAAGGGAGTTTAGATCGATAG 790413 Query 3852 TTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGG 3911 | ||| | |||| || || ||||| |||||||| |||||| | || || || || || | Sbjct 790412 TGATGGGACATACTGATGGTAAAGGCGTACATTTCATGATGTCAGATGGAGGATTTTCAG 790353 Query 3912 TTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTT 3971 | || ||||||||||| || || ||||| |||||||| | | ||||| |||||||| | Sbjct 790352 TGGAAGGTCAAGAAAACATACAGGAAATTTTATCGAAGCAATTATATTTATGTCAATGCT 790293 Query 3972 TAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATAT 4031 || | || |||||||| | || |||| |||| ||||| ||| | |||||| ||| Sbjct 790292 TAGTGGCGTTGATGATAGTGAGACCAAGTGGACATTTTGTTACAAAACTGTTCGATCTAT 790233 Query 4032 TTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTA 4091 ||||||| ||||| | ||| | | ||| ||||||| | ||| | |||||| | Sbjct 790232 TTACACCATTTAGCGTTGGGCTTATTTATCTGATGTACCATTGCTTTGAAAGTATTTCGA 790173 Query 4092 TTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 |||| || || || | || |||| |||||||| ||| | |||||| | ||| Sbjct 790172 TTTTTAAGCCTAATACTTCCAGACCAGCCAATTCAGAACGTTATTTGATATGT 790120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276544041270508