Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq43 127 1e-24 seq62 123 1e-23 seq28 118 6e-22 seq9 116 2e-21 >seq43 Length=2330101 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||||| || ||||||||||| |||||||||| ||||||||||||||||| Sbjct 520824 AATAAATAAAAAA--AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 520767 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 520766 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 520734 >seq62 Length=1311589 Score = 123 bits (136), Expect = 1e-23 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| ||||||| || ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 743821 TTATTAAAAAA--AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 743878 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 743879 ACGACGCTCTAACCAACTGAGCTAATGGGCC 743909 Score = 95.1 bits (104), Expect = 6e-15 Identities = 75/87 (86%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || | |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 744152 AAAAGAT-AGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 744210 Query 11504 GCTCTRACCAACTGAGCTAA-TGGGCC 11529 ||||| ||||||||||| |||||| Sbjct 744211 GCTCT----AACTGAGCTAACTGGGCC 744233 >seq28 Length=4164731 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| | ||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 2082186 ATAAAAAAGAATATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 2082245 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 2082246 GACGCTCTAACCAACTGAGCTAATGGGCC 2082274 >seq9 Length=7121624 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 450241 AAAAAATAAGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 450300 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||| |||||||||||||| Sbjct 450301 GCTCTAACCAATTGAGCTAATGGGCC 450326 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261482161883536