Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq14 136 4e-27 seq3 132 4e-26 seq4 120 3e-22 seq71 96.9 3e-15 >seq14 Length=6127344 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||||||||| || | ||| || || | ||| || |||||| || || ||||| Sbjct 6014245 GTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCA 6014304 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | ||| ||||||||||||||||||||||| || | || || || ||| Sbjct 6014305 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTG 6014364 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| |||||||| || || |||| ||||||||||||||||| || ||| Sbjct 6014365 ACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTT 6014424 Query 94991 TTCACAAAGATCTGCATG 95008 || |||||||| |||||| Sbjct 6014425 TTTACAAAGATTTGCATG 6014442 Score = 120 bits (132), Expect = 3e-22 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||| | |||| |||| || | || ||||| || || | | Sbjct 6013975 AAAATTTGCATTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATG 6014034 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | ||| || || |||| |||||| || ||||||| || | |||| Sbjct 6014035 TTGTAGTCGGAAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGC 6014094 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || ||||||||||| |||||||| | || || || || || | | |||||| Sbjct 6014095 TGGTCAGGAGGAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCA 6014154 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || |||| ||||| ||||| || |||||||| || ||||||||||||||| Sbjct 6014155 GAAGCTTCAACTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 6014214 Query 95009 C 95009 | Sbjct 6014215 C 6014215 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 94776 ACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAAT 94835 |||| ||||| | | ||| || || ||||| | || ||||| ||||| | ||| |||| Sbjct 6013526 ACACACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAAT 6013585 Query 94836 CGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895 | | ||| || ||| ||||| ||||| ||| | || || | | || ||||| | Sbjct 6013586 CAGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCG 6013645 Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT 94955 | ||||| || |||||||| | |||||| ||||| ||| ||| ||||| | | Sbjct 6013646 GTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTT 6013705 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || | || |||||||| ||||| ||||||||||| || || ||||| Sbjct 6013706 CGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||| | |||| |||| ||| | || ||||| || || | | Sbjct 6013747 AAAATTTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATG 6013806 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | ||| || ||| |||| ||||| ||| | || || | | || Sbjct 6013807 TTGTAGTCGGAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGT 6013866 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || ||||| || |||||||| | |||||| ||||| ||| ||| ||||| Sbjct 6013867 TGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCT 6013926 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | || |||||||| ||||| ||||||||||| || || ||||| Sbjct 6013927 GAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 >seq3 Length=10655775 Score = 132 bits (146), Expect = 4e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| ||||| ||||||||||| || | ||||| | | | ||||| || ||| | Sbjct 2297538 ACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGT--CAGAAAGTGTGCGACCATCTT 2297595 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || ||||||||| | ||||| ||||| |||||||| || || || |||||||||| | Sbjct 2297596 CAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTATT 2297655 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| |||||||| ||| |||||| | || | || | ||||||||| | Sbjct 2297656 GAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATGGTCT 2297715 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || ||||| ||||| |||||||| Sbjct 2297716 TTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 ||||| || ||||| || || | ||||||||| | || | || || || ||| Sbjct 2297772 TGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGT 2297831 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| ||||||| ||||| ||||||||||| || || ||||||||||| | |||||| Sbjct 2297832 TTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTG 2297891 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| ||| ||||| | || || || | || ||||| ||||| || Sbjct 2297892 GCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTC 2297951 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| |||||||||||||| Sbjct 2297952 AGGGTTTTGACAAAGATCTGCAT 2297974 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| || | ||||| | ||||| || | ||| ||||||||||| | || ||||| Sbjct 2297972 CATTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATC 2298031 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || ||| ||| |||||||| ||||| ||||||| || | |||||||| || Sbjct 2298032 AGACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGG 2298091 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || |||||||| || | || ||||| || ||| ||| ||||||| || Sbjct 2298092 TGGGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTC 2298151 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || |||| || ||||| || || || | || ||||| || ||||||||| Sbjct 2298152 AACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 2298203 >seq4 Length=9433735 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 ||||| | ||| |||||| || |||| ||||||||||||||| ||| | ||||| Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 | || || |||||||| ||||| || || ||||| | || || |||||||| || Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 6954633 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | ||| |||| | || || || | || |||||||| || ||||| |||||||| ||| Sbjct 6954632 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 6954573 Query 95000 ATCTGCATG 95008 ||||||||| Sbjct 6954572 ATCTGCATG 6954564 >seq71 Length=1082584 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| |||| ||| ||||| |||||||||||||| || | |||||||| | Sbjct 572866 CCGCCTCGCAAGCGCAGCACTAAGTGTAAAGTAGATTCCTTCTGGATATTATAATCCGAC 572925 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || || |||| || || || ||||||| ||||||||||||||||| ||| Sbjct 572926 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 572985 Query 94901 ATACCT 94906 || ||| Sbjct 572986 ATTCCT 572991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448275308076960