Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27]
2,836 sequences; 317,690,795 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq14 136 4e-27
seq3 132 4e-26
seq4 120 3e-22
seq71 96.9 3e-15
>seq14
Length=6127344
Score = 136 bits (150), Expect = 4e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
||||||||||| || | ||| || || | ||| || |||||| || || |||||
Sbjct 6014245 GTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCA 6014304
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
||||||| || | ||| ||||||||||||||||||||||| || | || || || |||
Sbjct 6014305 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTG 6014364
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| ||| |||||||| || || |||| ||||||||||||||||| || |||
Sbjct 6014365 ACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTT 6014424
Query 94991 TTCACAAAGATCTGCATG 95008
|| |||||||| ||||||
Sbjct 6014425 TTTACAAAGATTTGCATG 6014442
Score = 120 bits (132), Expect = 3e-22
Identities = 171/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || |||||||| | |||| |||| || | || ||||| || || | |
Sbjct 6013975 AAAATTTGCATTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATG 6014034
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || ||| | ||| || || |||| |||||| || ||||||| || | ||||
Sbjct 6014035 TTGTAGTCGGAAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGC 6014094
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|| || ||||||||||| |||||||| | || || || || || | | ||||||
Sbjct 6014095 TGGTCAGGAGGAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCA 6014154
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| || || |||| ||||| ||||| || |||||||| || |||||||||||||||
Sbjct 6014155 GAAGCTTCAACTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 6014214
Query 95009 C 95009
|
Sbjct 6014215 C 6014215
Score = 116 bits (128), Expect = 3e-21
Identities = 165/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 94776 ACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAAT 94835
|||| ||||| | | ||| || || ||||| | || ||||| ||||| | ||| ||||
Sbjct 6013526 ACACACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAAT 6013585
Query 94836 CGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895
| | ||| || ||| ||||| ||||| ||| | || || | | || ||||| |
Sbjct 6013586 CAGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCG 6013645
Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT 94955
| ||||| || |||||||| | |||||| ||||| ||| ||| ||||| | |
Sbjct 6013646 GTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTT 6013705
Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || | || |||||||| ||||| ||||||||||| || || |||||
Sbjct 6013706 CGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757
Score = 111 bits (122), Expect = 1e-19
Identities = 168/239 (70%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || |||||||| | |||| |||| ||| | || ||||| || || | |
Sbjct 6013747 AAAATTTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATG 6013806
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || ||| | ||| || ||| |||| ||||| ||| | || || | | ||
Sbjct 6013807 TTGTAGTCGGAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGT 6013866
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
||||| || ||||| || |||||||| | |||||| ||||| ||| ||| |||||
Sbjct 6013867 TGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCT 6013926
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| ||||| || | || |||||||| ||||| ||||||||||| || || |||||
Sbjct 6013927 GAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985
>seq3
Length=10655775
Score = 132 bits (146), Expect = 4e-26
Identities = 157/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
||||| ||||| ||||||||||| || | ||||| | | | ||||| || ||| |
Sbjct 2297538 ACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGT--CAGAAAGTGTGCGACCATCTT 2297595
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
| || ||||||||| | ||||| ||||| |||||||| || || || |||||||||| |
Sbjct 2297596 CAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTATT 2297655
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|||||| |||||||| ||| |||||| | || | || | ||||||||| |
Sbjct 2297656 GAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATGGTCT 2297715
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || || ||||| ||||| ||||||||
Sbjct 2297716 TTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
||||| || ||||| || || | ||||||||| | || | || || || |||
Sbjct 2297772 TGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGT 2297831
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
||||| ||||||| ||||| ||||||||||| || || ||||||||||| | ||||||
Sbjct 2297832 TTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTG 2297891
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
|||||||| ||| ||||| | || || || | || ||||| ||||| ||
Sbjct 2297892 GCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTC 2297951
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
|| ||||| ||||||||||||||
Sbjct 2297952 AGGGTTTTGACAAAGATCTGCAT 2297974
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836
|| ||| || | ||||| | ||||| || | ||| ||||||||||| | || |||||
Sbjct 2297972 CATTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATC 2298031
Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896
|| ||| ||| |||||||| ||||| ||||||| || | |||||||| ||
Sbjct 2298032 AGACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGG 2298091
Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956
|| || |||||||| || | || ||||| || ||| ||| ||||||| ||
Sbjct 2298092 TGGGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTC 2298151
Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| |||| || ||||| || || || | || ||||| || |||||||||
Sbjct 2298152 AACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 2298203
>seq4
Length=9433735
Score = 120 bits (132), Expect = 3e-22
Identities = 140/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879
||||| | ||| |||||| || |||| ||||||||||||||| ||| | |||||
Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
| || || |||||||| ||||| || || ||||| | || || |||||||| ||
Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 6954633
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| ||| |||| | || || || | || |||||||| || ||||| |||||||| |||
Sbjct 6954632 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 6954573
Query 95000 ATCTGCATG 95008
|||||||||
Sbjct 6954572 ATCTGCATG 6954564
>seq71
Length=1082584
Score = 96.9 bits (106), Expect = 3e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| ||| |||| ||| ||||| |||||||||||||| || | |||||||| |
Sbjct 572866 CCGCCTCGCAAGCGCAGCACTAAGTGTAAAGTAGATTCCTTCTGGATATTATAATCCGAC 572925
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| || || |||| || || || ||||||| ||||||||||||||||| |||
Sbjct 572926 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 572985
Query 94901 ATACCT 94906
|| |||
Sbjct 572986 ATTCCT 572991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448275308076960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |