Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18 203 5e-48 seq43 154 2e-33 >seq18 Length=5917505 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||||||||| ||||| |||||||||||| Sbjct 4415162 GCGAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAAGGTATCACTAAGCCAGCTATC 4415103 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || |||||||| ||||||||| |||| || ||| |||| ||||| | | Sbjct 4415102 CGTCGTTTGGCACGACGTGGTGGTGTCAAGCGTATCTCCGGCTTGATCTACGAAGAAACT 4415043 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| || ||| |||||||| ||| |||||| | |||||| | || || || Sbjct 4415042 CGAGGTGTGTTAAAGGTCTTCCTCGAGAACGTTATTCGCGATGCTGTTACTTACACTGAA 4414983 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || ||||||| |||| || || |||||||||||||| Sbjct 4414982 CACGCGAAAAGGAAGACCGTGACAGCCATGGACGTCGTATACGCCCTGAAACGTCAAGGC 4414923 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 4414922 AGAACTCTATACGGCTTTGGTGGTTAA 4414896 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||| | | | |||| || |||||||| ||||| |||||||||||||| || Sbjct 1202276 GCGAAGCGCCATAGGA-AGGTCTTGCGTGATAACATTCAAGGTATCACCAAGCCAGCCAT 1202334 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| | ||||| || ||||||||| | ||||| ||| |||||||||||| Sbjct 1202335 TCGTCGATTGGCTAGACGTGGCGGTGTCAAGCGTATTTCTGGCTTGATCTATGAAGAGAC 1202394 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| |||| |||| || | | ||| || | ||||||| | ||||||||| Sbjct 1202395 CAGAGGTGTCCTGAAAGTCTTTCTGGAAAACGTCATTCGTGATGCTGTGACCTATACCGA 1202454 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || | |||||| | ||||| || ||||||| ||||| Sbjct 1202455 ACACGCCAAGAGGAAGACTGTAACAGCTATGGATGTGGTCTACGCTCTGAAACGCCAAGG 1202514 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||||||||| || |||||| Sbjct 1202515 AAGAACTCTTTATGGTTTCGGTGGTTAAT 1202543 >seq43 Length=2330101 Score = 154 bits (170), Expect = 2e-33 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || || |||||||| || ||||||||| |||| |||||||| Sbjct 1001472 CTCCGTGATAACATCCAGGGGATTACCAAGCCGGCCATCCGTCGTTTGGCACGTCGTGGC 1001531 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||| ||| | || |||||| | |||||||| | |||| ||| |||| | ||| Sbjct 1001532 GGAGTCAAACGTATTTCCGGATTGATTTATGAAGAAACACGTGGTGTACTGAAAGTGTTC 1001591 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | ||||| | ||| || | ||| ||||| || || ||| | |||||||| Sbjct 1001592 TTAGAAAATGTTATTCGTGACGCGGTTACCTACACCGAACATGCAAAAAGAAAGACTGTG 1001651 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||||| ||||||| || ||||||||||||| Sbjct 1001652 ACTGCCATGGACGTCGTCTACGCCCTGAAACGTCAAGG 1001689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072607025348