Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq14 145 7e-30 seq3 107 2e-18 >seq14 Length=6127344 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | ||||| ||| | |||||| |||||||||| || Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || || ||| |||||||| || || || || ||||| Sbjct 6013698 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 6013639 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | ||||||| || |||||| ||||| ||||||| ||||| | ||||| || Sbjct 6013638 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 6013579 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||||||||| ||| | || ||||| ||| || | | ||||| Sbjct 6013578 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 6013531 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | ||||| ||| | |||||| |||||||||| || Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || || ||| |||||||| || || || || ||||| Sbjct 6013926 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 6013867 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | ||||||| || |||||| ||| | ||||||| ||||| | ||| || || Sbjct 6013866 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAA 6013807 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 |||||| |||||||| || |||| Sbjct 6013806 CATTCAGAAAGAATCCACGCTTCA 6013783 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | ||||||||| | || ||| | || || || || Sbjct 6014441 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 6014382 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| ||||| || |||||||| || ||||| |||||| Sbjct 6014381 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 6014322 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | | || |||||||| || |||| ||||| | || || ||| Sbjct 6014321 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 6014262 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||| || |||||||| ||||| Sbjct 6014261 ATTCAGAAGGAATCTACGCTTCAT 6014238 >seq3 Length=10655775 Score = 107 bits (118), Expect = 2e-18 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | ||||| | || ||||| || Sbjct 2294862 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 2294803 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || || || ||||||||||| |||||||||||| Sbjct 2294802 GACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAA 2294743 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCA-GCGATTATA 24168 || ||||| |||| || |||||||| || || ||| ||| | || | | ||| |||| Sbjct 2294742 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGG--ACTTTATCCGACTATA 2294685 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 | ||||| |||||||||||| |||| Sbjct 2294684 ATATTCAGAAAGAATCTACACTTCA 2294660 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | || ||||| | ||||| | ||||| ||||| Sbjct 2297975 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATC 2297916 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | ||||| || ||| ||||||||||| || || || ||||| Sbjct 2297915 AGACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCA 2297856 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| |||| | | || || ||||| ||||| | | | | | |||||||| Sbjct 2297855 GCAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAA 2297796 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||| |||||||| ||| | ||| |||| Sbjct 2297795 CATTCAGAAAGAATCCACATTGCATCTAGT 2297766 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| || || || | || || | ||||| ||||| Sbjct 2298202 ATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 2298143 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || ||| |||||| || ||||||||||| || || ||||| Sbjct 2298142 GACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGATCAG 2298083 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | | || ||||| || ||||||| | | | ||||| || Sbjct 2298082 CAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAAT 2298023 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| ||||| || | ||||| || | |||||| | || ||| Sbjct 2298022 ATTCAAAAGGAATCCACTCTCCATTTGGTCCTCAGATTGCGTGGTGGA 2297975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429921139799580