Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq14 111 1e-19 seq3 93.3 4e-14 >seq14 Length=6127344 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAG-TCC 115342 |||||||||||| || ||||| ||||| || |||||||||||| ||||| || || | | Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || |||| | | | | ||||| |||||| || ||||| || | || ||| Sbjct 6013926 AG--ACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGAT 6013869 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | || |||| || ||||||||||| ||||||| || ||| | |||| || Sbjct 6013868 CAACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTAC 6013809 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||| ||||| || || | || |||| || | | |||||||||| Sbjct 6013808 AACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 6013757 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA-ACGGAG-TCC 115342 |||||||||||| || ||||| ||||| || |||||||||||| ||||| || || | | Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||||| | | | | ||||| |||||| || ||||| || | || ||| Sbjct 6013698 A--GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGAT 6013641 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | || |||| || ||||||||| | ||||||| || ||| | | ||||| Sbjct 6013640 CAACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTAC 6013581 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| |||||||| || || Sbjct 6013580 AACATCCAAAAAGAATCCAC 6013561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 115277 AGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG 115336 ||||| | |||||||| ||||| ||||| ||||| ||||||||||| ||| | || | Sbjct 6014450 AGATTCATCATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTG 6014391 Query 115337 GAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCC 115396 || | |||||| | | | | || ||| || || ||||||||||| | || Sbjct 6014390 GAAGCTTCTGACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCT 6014331 Query 115397 GTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCC 115456 ||||| ||| | | || | ||| || || ||| |||| |||| || ||| | | Sbjct 6014330 CCAGATCAACAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCT 6014271 Query 115457 GATTATAACATTCAAAAAGAGTCTAC 115482 || || |||||||| || || ||||| Sbjct 6014270 GACTACAACATTCAGAAGGAATCTAC 6014245 >seq3 Length=10655775 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAG-TCCA 115343 ||||| |||||||||||||| ||||| || ||||| ||||| | || || || | || Sbjct 2294862 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 2294803 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | | || || ||||| |||||||||||| | || |||| Sbjct 2294802 G--ACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATC 2294745 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | |||||||| |||| |||||||| || |||| |||| || | |||| |||| Sbjct 2294744 AACAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATA 2294685 Query 115464 ACATTCAAAAAGAGTCTAC 115482 | ||||| ||||| ||||| Sbjct 2294684 ATATTCAGAAAGAATCTAC 2294666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||||||||| || || ||||| |||||||| | ||| ||| | Sbjct 2297975 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATC 2297916 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | || || |||||| || |||||||| ||||| ||||| Sbjct 2297915 AGACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCA 2297856 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | ||| || |||||| | ||||| | | || | | |||||||| Sbjct 2297855 GCAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAA 2297796 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| ||||| || || Sbjct 2297795 CATTCAGAAAGAATCCAC 2297778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| |||||||||||||| || || ||||| ||||| || | |||| ||| | Sbjct 2297747 AATGCAGATTTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAATTGAGGCGTC 2297688 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | | || || |||||| | |||||||| ||||| ||||| Sbjct 2297687 AGACACTATCGAGAATGTCAAGGCCAAAATTCAATACAAAGAAGGAATCCCCCCGGATCA 2297628 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | || || |||||| | ||||||| || | | || ||||| Sbjct 2297627 GCAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTATAA 2297568 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||| || || ||||| | ||| |||| Sbjct 2297567 TATTCAGAAGGAATCTACCTTGCATTTGGT 2297538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425329298516320