Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq14 118 9e-22 >seq14 Length=6127344 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| || |||||||| || || || ||||||||||||| Sbjct 6013759 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6013818 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || |||||||||||||| || |||| || |||||||| ||| || Sbjct 6013819 AGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 6013878 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| ||||| ||| || | | | ||||| | || | Sbjct 6013879 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACT 6013938 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| |||||||| || || || ||||| || ||||| |||||| Sbjct 6013939 TCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| ||| |||||||| || || || ||||||||||||| Sbjct 6013987 CCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6014046 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || |||| ||||| ||||| || ||| | || | || || ||||| ||| Sbjct 6014047 AGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 6014106 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | ||||| | || Sbjct 6014107 ATACCCTCTTTGTCTTGGATCTTAGCT--TTTACATTTTCTATTGTGTCAGAAGCTTCAA 6014164 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||| ||||| || || || || || ||||| |||||||| Sbjct 6014165 CTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| || ||||| |||||||| || | | ||| || | || |||| |||| Sbjct 6013555 TGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCTTCCAGTTGT 6013614 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || |||||||| ||| || | ||||||||||| ||||| Sbjct 6013615 TTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTG 6013674 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | || ||| | ||| |||||||| || || Sbjct 6013675 GCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTG 6013734 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || ||||| || ||||| |||||| Sbjct 6013735 AGAGTTTTCACGAAAATTTGCATT 6013758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| || | ||| ||||| || ||||| || ||||||||||| | Sbjct 6014215 CCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAA 6014274 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | ||||| | ||| || || ||| | || | || ||||| || ||| Sbjct 6014275 AGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 6014334 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || ||||| || || || ||| || || | | | |||||| | ||| Sbjct 6014335 ATACCTTCTTTATCTTGGATCTTAGCT--TTGACATTTTCGATAGTGTCAGAAGCTTCCA 6014392 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||||||| || || ||||| ||||| || ||||| Sbjct 6014393 CCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405073998639640