Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq30 242 2e-59 seq3 132 3e-26 seq51 127 1e-24 seq2356 125 5e-24 seq4 107 1e-18 seq14 104 2e-17 seq63 98.7 7e-16 >seq30 Length=3857846 Score = 242 bits (268), Expect = 2e-59 Identities = 326/452 (72%), Gaps = 4/452 (1%) Strand=Plus/Minus Query 6152 ATCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTA 6211 |||| ||| ||||||| | | ||||| ||||| ||||| || || || || || || Sbjct 1780776 ATCGGTCACCATGGGGAGCGTAAACGTCAATCGCAATGTCAGCGATGCTTTTTATCGTTA 1780717 Query 6212 CAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCAT 6271 || |||||||| ||| || ||||| || || || ||||| ||||||||||| || || Sbjct 1780716 TAAGATGCCGCGGATCCAGGCAAAGGTGGAAGGCAAAGGAAATGGTATTAAAACAGTGAT 1780657 Query 6272 TGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATA 6331 ||||||||| || || || |||||| |||| || ||||| || || ||||| || || Sbjct 1780656 CGTCAACATGGTGGATGTAGCGAAGGCGATCGGTCGTCCTGCTACATATCCGACCAAGTA 1780597 Query 6332 TTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGT 6391 |||||| ||||| | ||||||||||| |||||||| ||| ||||| ||||||||||| Sbjct 1780596 TTTCGGTTGCGAGTTGGGCGCTCAGACACAGTTTGACTTCAAGAACGAACGCTTCATCGT 1780537 Query 6392 TAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTT 6451 ||||| || || | | | ||| | || ||| | || || || || ||||| || | Sbjct 1780536 CAACGGCTCACACGATGCGACAAAGTTACAAGACCTGCTGGATGGTTTCATTCGAAAATA 1780477 Query 6452 TGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAA 6511 ||| || || | || |||||||| ||||| ||||| | || || | | |||| Sbjct 1780476 TGTTCTTTGCCCGGCCTGCGATAATCCGGAAACCGAATTAATGGTCAGTTCGAAGAAGGG 1780417 Query 6512 CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCA--CAC 6569 ||| || || ||||| ||||| ||||| || |||||||| || || | || ||| Sbjct 1780416 CACGATTTCACAGGGTTGCAAGGCGTGTGGGCACCATGGCCTTCTTGA--GAGCAATCAC 1780359 Query 6570 AAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || | ||||| | ||| |||| ||||| || Sbjct 1780358 AAGTTGAACACATACATCTTGAAAAATCCGCC 1780327 >seq3 Length=10655775 Score = 132 bits (146), Expect = 3e-26 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | ||| | | |||||||| |||||| ||||||||||||||||||| Sbjct 2297972 CATT-CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAAT 2298030 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| |||| | || || | || ||||| ||||| || | || || ||||| | Sbjct 2298031 CAGACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAG 2298090 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||| ||| || ||| || || |||| || || || | | Sbjct 2298091 GTGGGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCT 2298150 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||| | || || || || || ||||| || |||||||| ||||||||| Sbjct 2298151 CAACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 2298203 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || || ||||| || |||||||| | ||| |||| || | ||||||||| ||||| Sbjct 2297784 TCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAG 2297843 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | | || ||||| | ||||| ||||||||||| |||||| ||| ||||| Sbjct 2297844 ATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTT 2297903 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || ||| |||||||| |||||||| || || || |||| |||||| || Sbjct 2297904 TCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACA 2297963 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 2297964 AAGATCTGCAT 2297974 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||| | |||||||| | || ||||| |||||||| || |||| Sbjct 2297518 TACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAG 2297577 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | |||||||||||| || || | | || ||||| | || Sbjct 2297578 AAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGG 2297637 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||| |||||| ||| ||||||| || ||| ||| |||| Sbjct 2297638 GGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAA 2297697 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || || || || |||| |||||| || || |||||||| Sbjct 2297698 TTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || || |||||||| || || || ||| ||| | || |||| || || || || || Sbjct 2294672 TCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAA 2294731 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 ||||| | ||||||||||| || | ||||||||| || ||||| |||||| || Sbjct 2294732 ATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGTATTTTCGCCTTCACGTTT 2294791 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | || ||| | ||| || || | |||||||||||||| || | ||||| || Sbjct 2294792 TCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACA 2294851 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 2294852 AAAATCTGCAT 2294862 >seq51 Length=1949485 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| ||||||| || ||||||||||||||||||||||| || |||||||| Sbjct 1828387 AAGCCCGTTTCCTTGGCGGTAGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1828328 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1828327 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1828293 >seq2356 Length=2236 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 483 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 482 GGTCGTATTTAGCCTTA 466 >seq4 Length=9433735 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 ||||| || |||||||| |||||| ||| | || || | ||||| ||||| || || Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || || |||||||| | || | || || |||||| || || ||| ||||||| | Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 6954633 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | |||||| || || || | ||||| ||||||||||| | |||||||||||| Sbjct 6954632 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 6954573 Query 38310 ATCTGCATG 38318 ||||||||| Sbjct 6954572 ATCTGCATG 6954564 >seq14 Length=6127344 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||| | ||||| |||| ||||| ||| || || ||||| ||||| | Sbjct 6013755 CATT-CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGT 6013813 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || || |||||||| ||||| || || || || |||||||| | Sbjct 6013814 CGGAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCG 6013873 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | || ||||||||| |||||| ||| || || | || || ||| | || Sbjct 6013874 GTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTT 6013933 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | ||||| |||||||| || | ||||||||||| || ||||| Sbjct 6013934 CGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || || || || || || ||| || ||||| || ||||||||||| | | | | Sbjct 6013543 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 6013602 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | |||||| ||||| || || || || |||||||| | || | || |||||| Sbjct 6013603 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTG 6013662 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| |||||| ||| || || | || || ||| | ||| ||||| | ||||| Sbjct 6013663 TCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATG 6013722 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || | ||||||||||| || ||||| Sbjct 6013723 GTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757 >seq63 Length=1260229 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-GGTAATCTCGTTAATCCTTTCA 25967 |||||||||| |||||||||||||||||||| | | || |||||||||||||| |||| Sbjct 552435 TTCCCTTGGCAGTGGTTTCGCTAGATAGTAGGGACTGTGGGAATCTCGTTAATCCATTCA 552376 Query 25968 TGCGCGTCACTAATTAGATGA 25988 ||||| ||||||||||| ||| Sbjct 552375 TGCGCATCACTAATTAGGTGA 552355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935622968716