Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq73 100 4e-16 seq54 98.7 1e-15 seq30 89.7 7e-13 >seq73 Length=1005568 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||||||| | ||| ||||| || ||||||||||| |||| || |||||||| |||| Sbjct 745041 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 744982 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | |||||||| |||||||| || | ||| ||||| |||| ||||||| | | |||| Sbjct 744981 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 744922 Query 63930 ATTCTACCGTTGTTACACCA 63949 |||| ||||| || ||| Sbjct 744921 ATTCGCTTGTTGTCACTCCA 744902 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 ||||| ||| ||||| || |||| || || ||||| | || || || || | | || Sbjct 746815 AGCTATTTCGCAACTGGCTTCTAGAGCGCCATAATAGAGAGTCTCAAAAATTTGAATGTT 746756 Query 62518 TAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 62577 || || | ||||| ||| ||||||||||| | | | |||||| || |||||||| Sbjct 746755 AAGTTCATTAGCTTCTTTGCTTTCAAATGGATATCTCATTAAAATAAATGCATCTGCTAA 746696 Query 62578 TCCTTGAACACCAATACC 62595 |||||| ||||||||||| Sbjct 746695 TCCTTGTACACCAATACC 746678 >seq54 Length=1719504 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/269 (69%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 63506 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 || ||| || || || ||| || || || || || || || || || |||||| Sbjct 1010843 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 1010785 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 || || || || | ||| ||||| || ||||| || || || ||||| || ||||| Sbjct 1010784 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 1010725 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 63682 || || ||| | | || | ||||||||||||| ||| || || ||||| || || Sbjct 1010724 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 1010667 Query 63683 TCGTAAATAATAACCGAGTTGAGTTTATC 63711 ||||| || ||| | || | ||||| || Sbjct 1010666 TCGTATATTATAGCAGAATCCAGTTTCTC 1010638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| || || || | ||||| ||| ||||||| ||| || | ||| ||||| Sbjct 1012639 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 1012580 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || | |||||||||||||||||| | || || ||||| || ||||||||||| Sbjct 1012579 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 1012520 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | || || || ||||| ||||| || || || || || || ||||||||||| | || Sbjct 1012519 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 1012460 Query 62309 AAACTATTTCTAAGACCGT 62327 | | |||||| | |||| Sbjct 1012459 AGAGAATTTCTTACTCCGT 1012441 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||||||| ||| || ||||| ||||||||||| |||||| | ||||| || ||||| | Sbjct 1010427 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 1010368 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 1010367 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 1010308 Query 63930 ATTCTACCGTTGTTACACCATTATATA 63956 | || || ||||| ||| ||||| Sbjct 1010307 GTATAACTGTAGTTACTCCAGAATATA 1010281 >seq30 Length=3857846 Score = 89.7 bits (98), Expect = 7e-13 Identities = 143/203 (70%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 32761 ||||||| || ||||| || ||||| | || || || || |||||||| |||| || Sbjct 1772001 TTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATGGCTGC 1772060 Query 32762 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821 || ||| ||||| || || || ||||||||||| || | | | | || | Sbjct 1772061 GAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCGACTA--CACGTTCGGGA 1772118 Query 32822 ACCG--GCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 32876 | || ||||| ||||| ||||| ||| ||||||| |||||||| || |||||| Sbjct 1772119 AACGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAGCCTTCTTCTTGACACAA 1772178 Query 32877 GGCATTGTCTCTATAGCATTAAA 32899 || | |||||| || |||||||| Sbjct 1772179 GGAAGTGTCTCAATCGCATTAAA 1772201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633609537745600