Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14 149 5e-31 seq3 136 3e-27 seq4 109 5e-19 >seq14 Length=6127344 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | || |||||| |||| || ||||||| || | || Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | ||| | |||| ||| |||||||| || |||||||| || | Sbjct 6013926 AGACACCATCGAAAACGTAAAGGCCAAAATTCAG-GACAAAGAGGGAATTCCACCGGATC 6013868 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | ||||| |||||||||||||| ||||||| | ||| | ||| |||| Sbjct 6013867 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACA 6013808 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||| |||||||||||||| || | || || | || ||||||||| Sbjct 6013807 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 6013757 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | || |||||| |||| || ||||||| || | || Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | ||| | |||| ||| |||||||| || |||||||| || | Sbjct 6013698 AGACACCATCGAAAACGTAAAGGCCAAAATTCAG-GACAAAGAGGGAATTCCACCGGATC 6013640 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | ||||| |||||||||||| | ||||||| | ||| | ||||||| Sbjct 6013639 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 6013580 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || |||||||||||||| || || ||||| || | || | ||||| Sbjct 6013579 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 6013531 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||||||| | || |||||| | ||||| | ||||| || | ||| Sbjct 6014213 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCT 6014154 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| || | || |||||||| || ||||| |||||| Sbjct 6014153 GACACAATAGAA--AATGTAAAAGCTAAGATCCAA-GACAAAGAGGGTATTCCTCCTGAC 6014097 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || ||||| || ||||| | | ||| | ||| ||| Sbjct 6014096 CAGCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTAC 6014037 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| |||||||||||||| ||| | || || | || ||||||||| Sbjct 6014036 AACATTCAGAAAGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 6013985 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || ||| ||||||| | || ||||| | ||| Sbjct 6014441 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 6014382 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || ||| || |||||||| ||||| || || Sbjct 6014381 GACACTATCGAAAATGTCA---AAGC-TAAGATCCAAGATAAAGAAGGTATTCCTCCAGA 6014326 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || ||||| || || ||| |||| |||| | ||| | || || Sbjct 6014325 TCAACAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTA 6014266 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || ||||| ||||| ||| | || || Sbjct 6014265 CAACATTCAGAAGGAATCTACGCTTCATCTTGTTCT 6014230 >seq3 Length=10655775 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| |||||||| || |||| || | ||||| ||| | Sbjct 2298205 ACCATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGCT 2298146 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| |||||| | || ||| ||| || |||||||| || |||||||| Sbjct 2298145 TCTGACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGAT 2298086 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| || || || | ||||||| || ||| || |||||| Sbjct 2298085 CAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTAC 2298026 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 ||||||||||| |||||||| || ||||| || || || Sbjct 2298025 AATATTCAAAAGGAATCCACTCTCCATTTGGTCCTCAG 2297988 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| || || ||||||| | ||| | ||| |||| Sbjct 2297747 AATGCAGATTTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAATTGAGGCGTC 2297688 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||||| | || || |||| ||| | |||||||||| || || || || | Sbjct 2297687 AGACACTATCGAGAATGTCAAGGCCAAAATTCAAT-ACAAAGAAGGAATCCCCCCGGATC 2297629 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || || ||||| |||||| | ||||||| |||||| | || || | Sbjct 2297628 AGCAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTATA 2297569 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || ||||| || | ||||| || || Sbjct 2297568 ATATTCAGAAGGAATCTACCTTGCATTTGGTTCT 2297535 Score = 105 bits (116), Expect = 6e-18 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| || || |||| ||| | ||||| ||| | || Sbjct 2297975 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATC 2297916 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| ||||| |||| | || |||| ||| ||||||||||| || || || | Sbjct 2297915 AGACACGATCGAAAATGTCA---AGGCCAAAATTCAA-GACAAAGAAGGAATCCCCCCAG 2297860 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| | | || ||||| || |||||| | ||||| | || || | |||| Sbjct 2297859 ATCAGCAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATT 2297800 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||||||||| | ||| |||| || | ||| | || |||| Sbjct 2297799 ATAACATTCAGAAAGAATCCACATTGCATCTAGTCCTCCGTCTACGTGGTGGAA 2297746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| || ||||| ||||||||| || | || || ||||| |||||| | ||| Sbjct 2294997 GACAAGGAAGGAATCCCACCGGACCAACAGAGGTTGATCTTCGCCGGGAAACAACTTGAA 2294938 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | ||| || | || ||||||||||| ||||||||||| | ||||| || | Sbjct 2294937 GACGGTCGTACACTTTCTGACTACAATATTCAGAAAGAATCCACATTGCATTTGGTTTTG 2294878 Query 25212 AGGCT 25216 ||||| Sbjct 2294877 AGGCT 2294873 >seq4 Length=9433735 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || || || | || |||||| |||| || |||| || ||| | Sbjct 6954562 ACCATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCC 6954621 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||||||| | ||| || ||| ||||| || || ||||| || || Sbjct 6954622 TCTGATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGAT 6954681 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || ||||||||||| | || |||| |||||| || ||||||| Sbjct 6954682 CAACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTAC 6954741 Query 25176 AATATTCAAAAAG 25188 || || ||||||| Sbjct 6954742 AACATCCAAAAAG 6954754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433313022559340