Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14 159 3e-34 seq4 122 7e-23 seq3 107 2e-18 >seq14 Length=6127344 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||| | || |||||||| | || || ||||| ||| | | Sbjct 6013757 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 6013698 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || |||||||| ||||| ||||| |||||||| |||||| Sbjct 6013697 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 6013638 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||||||||| | || ||| | | || | || ||||||||| Sbjct 6013637 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 6013578 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||||||||| | || |||||||| ||| | || |||||| Sbjct 6013577 ATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGGT 6013530 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||| | || |||||||| | || || ||||| ||| | | Sbjct 6013985 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 6013926 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || |||||||| ||||| ||||| |||||||| |||||| Sbjct 6013925 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 6013866 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||||||||| || || ||| | | || | ||||| |||||| Sbjct 6013865 CAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAAC 6013806 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||||||||| | || | ||| |||| | || ||||| Sbjct 6013805 ATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 6013759 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || |||||||| |||| |||||||| ||| | | Sbjct 6014213 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCT 6014154 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || |||||||| ||||||||||| || || || Sbjct 6014153 GACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCAG 6014094 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || |||||||| || || | | || | ||||| |||||| Sbjct 6014093 CAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAAC 6014034 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||||||||| | ||| | ||| |||| | || ||||| Sbjct 6014033 ATTCAGAAAGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGG 6013987 Score = 131 bits (144), Expect = 1e-25 Identities = 192/270 (71%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 22180 AATTTAATATAAGAGATATAGTTT----TATACATTTGTAAAGATGCAAATTTTTGTTAA 22235 ||| |||||| | | |||| |||| | |||| | | | |||||||| ||||| || Sbjct 6014483 AATATAATATTATATATATTGTTTGTTATTTACAGAT-TCATCATGCAAATCTTTGTAAA 6014425 Query 22236 AACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATAT 22295 ||| | || || ||||| |||| ||||| |||||| | | || || | || || | Sbjct 6014424 AACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCTGACACTATCGAAAATGT 6014365 Query 22296 CAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGC 22355 |||| || || ||||| || || |||||||| || |||||||||||| | || ||||| Sbjct 6014364 CAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAACAACGTTTGATCTTTGC 6014305 Query 22356 CGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || || || |||||||| | | || | || || ||||||||||| || ||||| || Sbjct 6014304 TGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAACATTCAGAAGGAATCTAC 6014245 Query 22416 CATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | ||| | ||| |||| | || ||||| Sbjct 6014244 GCTTCATCTTGTTCTGCGTCTTCGTGGAGG 6014215 >seq4 Length=9433735 Score = 122 bits (134), Expect = 7e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || |||||||| | || || || || || || | Sbjct 6954565 ATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 6954624 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || || || ||||||||||| ||||| || |||||| Sbjct 6954625 GATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAA 6954684 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||||||| | |||||| ||||| | |||||||||||| Sbjct 6954685 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 6954744 Query 22399 ATTCAAAAAG 22408 || ||||||| Sbjct 6954745 ATCCAAAAAG 6954754 >seq3 Length=10655775 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | || |||||||| | || || || || ||| | | Sbjct 2294862 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 2294803 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||||| ||||| || || || ||||| ||||||||| Sbjct 2294802 GACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAA 2294743 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || ||||| ||| |||||||| || || | ||||| || || Sbjct 2294742 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 2294683 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| |||||||| || Sbjct 2294682 ATTCAGAAAGAATCTAC 2294666 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || ||||| || || | ||||||||||| || | | Sbjct 2298202 ATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 2298143 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| ||| || || || || || || || ||||| ||||| Sbjct 2298142 GACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGATCAG 2298083 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||| | || ||| || || | || |||||||| Sbjct 2298082 CAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAAT 2298023 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| |||||||| | ||||| || | ||||||| || || Sbjct 2298022 ATTCAAAAGGAATCCACTCTCCATTTGGTCCTCAGATTGCGTGGTGG 2297976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || | || | ||||| || | | Sbjct 2297974 ATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATCA 2297915 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||| || || || || || ||||| Sbjct 2297914 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 2297855 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||||| | || || ||| || | || ||||| ||| Sbjct 2297854 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAAC 2297795 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| ||||||||||| | ||| |||| Sbjct 2297794 ATTCAGAAAGAATCCACATTGCATCTAGT 2297766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713492626340