Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq41 93.3 9e-14 seq57 91.5 3e-13 seq44 91.5 3e-13 seq4 91.5 3e-13 seq30 87.8 4e-12 >seq41 Length=2526112 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1280379 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1280320 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 1280319 GCCCCACGTTGGGC 1280306 >seq57 Length=1520642 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 391142 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 391201 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 391202 CCCCACGTTGGGC 391214 >seq44 Length=2236265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 962096 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 962155 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 962156 CCCCACGTTGGGC 962168 >seq4 Length=9433735 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 3788288 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3788229 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 3788228 CCCCACGTTGGGC 3788216 >seq30 Length=3857846 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 3163447 GTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 3163506 Query 142113 CCCGCCAGAGA 142123 ||| |||| || Sbjct 3163507 CCCACCAGGGA 3163517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027799452265076