Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14 190 4e-43 seq3 165 2e-35 seq4 154 3e-32 >seq14 Length=6127344 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| |||| |||| ||| |||||||| ||||| || ||||| || |||| Sbjct 6013757 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 6013816 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || |||||||| || || || |||||||| || || | ||||| || |||| Sbjct 6013817 AAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 6013876 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || || ||||| ||||| || ||||| ||| ||||||||||||| | ||| | Sbjct 6013877 GAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGA 6013936 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | ||| |||||||| || ||||| || || ||||| || |||||| Sbjct 6013937 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || || || ||||| || ||||| |||||||||||||| ||||| || Sbjct 6013531 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 6013590 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || |||||||| || || | ||||| || |||||| Sbjct 6013591 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 6013650 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| ||||| || ||||| ||| ||||||||||||| | ||| ||| Sbjct 6013651 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACT 6013710 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| |||||||| || ||||| || || ||||| || |||||| Sbjct 6013711 TCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013758 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| |||| || | || ||||| || || || || ||||| || || || Sbjct 6014215 CCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAA 6014274 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| |||| ||||| || || || || | | |||||| || || ||| Sbjct 6014275 AGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 6014334 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || ||||| ||||| || ||||| ||||| ||||| | | ||| || Sbjct 6014335 ATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACC 6014394 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||||||||| |||||||| || || || || ||||| ||| Sbjct 6014395 TCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATGATG 6014445 >seq3 Length=10655775 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290 || ||| || | ||| || | ||| | ||| || || || ||||| || || ||||| || Sbjct 2294632 ATCTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTC 2294691 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 ||| | |||| ||||| |||| |||||| || ||||| || ||||||||||| ||||| Sbjct 2294692 GGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGG 2294751 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 ||||||||||| || ||||| || || ||||| ||| || || ||||||| | ||| Sbjct 2294752 AGGAATGCCTTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTC 2294811 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| || || ||||| || ||||| || ||||| || |||||||| Sbjct 2294812 GACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 145 bits (160), Expect = 1e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||| ||||| || ||||||||||| || || || | || ||||| | || || || Sbjct 2297778 GTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCA 2297837 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | ||| || || || || || || ||||| ||||||||||| || |||||| Sbjct 2297838 GCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTG 2297897 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || ||||| ||||||| || || |||||||| || ||||| ||||| || ||||| Sbjct 2297898 ACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTCAGGGTT 2297957 Query 68445 TTGACGAATATCTGCATT 68462 ||||| || ||||||||| Sbjct 2297958 TTGACAAAGATCTGCATT 2297975 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||| || ||||| || || ||||| || | || | |||||||| Sbjct 2297994 ACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCATCTTCC 2298053 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || | | || || || ||||| |||||||| || || || Sbjct 2298054 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGG 2298113 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||| || ||| |||||||||||| | | || ||||| | || ||||| || Sbjct 2298114 ATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 2298173 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || | ||||| ||||| |||||||| |||| Sbjct 2298174 CCGGTCAATGTCTTCACGAAAATCTGCATGGTGCT 2298208 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| | ||| ||||| || | ||||| ||||| || || || || || || Sbjct 2294864 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 2294923 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || ||||| | || ||||||||||| || | || |||||||| ||||| Sbjct 2294924 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 2294983 Query 68355 ATGCCTTCCTTGTCTT 68370 || ||||||||||||| Sbjct 2294984 ATTCCTTCCTTGTCTT 2294999 >seq4 Length=9433735 Score = 154 bits (170), Expect = 3e-32 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||||||||| |||||||| | || | ||||| || | ||| || |||||||| | Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 |||||| ||||| || || ||||| || |||||||| || ||||| |||||||| || Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||| || || | | ||||| || | ||| |||||||| ||||| ||||| || |||| Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 68452 ATATCTGCAT 68461 | |||||||| Sbjct 6954574 AGATCTGCAT 6954565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589728485920