Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq14 145 6e-30 seq3 116 3e-21 seq4 95.1 1e-14 >seq14 Length=6127344 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||| |||||||| || | || ||||||||||| ||||||||||| Sbjct 6013530 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 6013589 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | |||||| |||||||| || ||| | || ||||||||||| ||||| || Sbjct 6013590 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 6013649 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || |||||||| ||| || |||| | ||| | |||||| | | |||||| Sbjct 6013650 AATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 6013709 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || |||||||| || ||||| ||||| Sbjct 6013710 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || ||| | || | ||| |||||||| ||||||||||| ||| Sbjct 6013756 ATTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCG 6013815 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| | |||||| || ||| | || ||||||||||| ||||| Sbjct 6013816 GAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGT 6013875 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| ||| || |||| | ||| | |||||| | | |||| Sbjct 6013876 GGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCG 6013935 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || |||||||| || ||||| ||||| Sbjct 6013936 ACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || ||| | ||| | ||| |||||||| ||||||||||| ||| Sbjct 6013984 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCG 6014043 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||| | ||||||||||| |||| | ||| || ||||| ||| Sbjct 6014044 GAAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGA 6014103 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| ||||| ||||| | ||| | ||||| | | ||| Sbjct 6014104 GGAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCA 6014163 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | ||||| || || ||||| |||||||| ||||||||| || Sbjct 6014164 ACTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATGCCT 6014217 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || ||| | ||| | ||||||||| || ||||||||||| || Sbjct 6014212 ATGCCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCA 6014271 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| || ||||| || ||||| |||| | ||| ||||| || ||| Sbjct 6014272 GAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGA 6014331 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || ||||| ||| | | ||| | ||||| | | ||| Sbjct 6014332 GGAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCC 6014391 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | ||||| || || || ||||||||||| || |||||| Sbjct 6014392 ACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATG 6014442 >seq3 Length=10655775 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| | ||| | || ||||| | || ||||| |||||||| |||||||| Sbjct 2297973 ATTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCA 2298032 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| || || || ||||| |||| | |||||| || || || Sbjct 2298033 GACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGT 2298092 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||||||||| || |||||| ||||| | || | |||||| | | || Sbjct 2298093 GGGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCA 2298152 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || || | || | || || ||||||| || || || ||||||||||||| Sbjct 2298153 ACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGG 2298204 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || |||||||| ||||| | || |||||||| ||||| ||||| || Sbjct 2294861 ATACCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCA 2294920 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||||||||| || ||| |||| | | |||||||||||| Sbjct 2294921 GAAAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGT 2294980 Query 114273 GGAATGCCTTCTTTGTC 114289 || || ||||| ||||| Sbjct 2294981 GGGATTCCTTCCTTGTC 2294997 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| ||||| || || ||| | ||| || ||| || || || || || Sbjct 2294666 GTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCC 2294725 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||||| || ||||||||||||||||| || || || || Sbjct 2294726 GCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGTATTTTCGCCTTC 2294785 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | | |||||| |||| || | ||||| || || |||||| Sbjct 2294786 ACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTT 2294845 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 2294846 TTGACAAAAATCTGCAT 2294862 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | |||| ||| | || |||||||| |||||||| ||||| Sbjct 2297745 ATTCCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCA 2297804 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||||||||||| ||||| |||| | | ||| || || || Sbjct 2297805 GAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGG 2297864 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||| || || | | ||| | ||||| | | || Sbjct 2297865 GGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCA 2297924 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || ||||| ||||| ||||| |||||||| Sbjct 2297925 ACTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 2297974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | | ||| ||||| | |||||||| || ||||| || || || Sbjct 2297517 ATACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCA 2297576 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||||||||||||||| || ||| |||| | | ||| || ||||| Sbjct 2297577 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGG 2297636 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||||| ||| || || | | || | ||||| | | || Sbjct 2297637 GGGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCA 2297696 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | || || || ||||| ||||| |||||||||||||| Sbjct 2297697 ATTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746 >seq4 Length=9433735 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 ||||||| |||||||||||| || ||| || ||| || || ||||| || ||| ||| Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 |||| |||||||| || || ||||| || || ||||| ||||| || | | | Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | || || | || || || || | ||| | ||||| || || || ||||| || | Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 114373 AAATCTGCATGG 114384 | |||||||||| Sbjct 6954574 AGATCTGCATGG 6954563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420119878579632