Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 seq14 143 6e-29 >seq3 Length=10655775 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | ||| || || | ||| | ||| ||| ||||| ||||| || || | Sbjct 2297975 TCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGA 2298034 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || ||||| ||||| | || ||||| || ||||||| |||||| ||| | ||| Sbjct 2298035 CAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGG 2298094 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||||||||||||||| || ||||| ||||| || || | || | || || Sbjct 2298095 GATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAAC 2298154 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || ||||||||||||| ||||| ||||| |||||||| Sbjct 2298155 TTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 Score = 136 bits (150), Expect = 9e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 288234 GATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGAT 288293 || ||| |||| ||| || | |||| |||||| || |||| || |||||| || || Sbjct 2294623 GAATCAGACATCTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAAT 2294682 Query 288294 ATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTG 288353 ||||||||||| | || ||||| || |||| || || || ||||| || || | || Sbjct 2294683 ATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTG 2294742 Query 288354 TTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC 288413 |||| || || ||||||||||| || |||||||| ||||||||||| || | || Sbjct 2294743 TTGATCGGGAGGAATGCCTTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTC 2294802 Query 288414 GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| || || ||||| || || || || || ||||| ||||| || |||||||| Sbjct 2294803 TGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||| | ||| |||||| || || ||||| || | Sbjct 2297747 TCCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGA 2297806 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||| || |||||||| | ||||||||| || ||||||| | ||| ||| ||||| Sbjct 2297807 AAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGA---TCTGG 2297863 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||||||||| || || ||||| || || || ||||| || | || | || Sbjct 2297864 GGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTC 2297923 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || ||||| || ||||| || ||||| || ||||||||| Sbjct 2297924 AACTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||||||||| | || ||||| || ||||| | ||||||||| ||||| Sbjct 2297555 TTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAA 2297614 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||| ||| |||||||||||||| | || ||||| || || || || Sbjct 2297615 GATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATT 2297674 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || || || | ||| | |||||| ||||| || ||||| || ||||| Sbjct 2297675 CTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGAC 2297734 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 2297735 AAAAATCTGCATT 2297747 >seq14 Length=6127344 Score = 143 bits (158), Expect = 6e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || || |||| |||| |||||| || || || ||||||| Sbjct 6013758 TCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGA 6013817 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || ||||| |||||||| || ||||| ||||||||||||||| ||| Sbjct 6013818 AAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 6013877 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||| ||||| ||||| ||||| || || |||||||| || | || | ||| || Sbjct 6013878 AATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 6013937 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||| || || || || || || ||||| || ||||| || |||||| Sbjct 6013938 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | || || | || ||||| | |||||| || ||||| Sbjct 6013566 TTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAA 6013625 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||||||||| ||| ||||| ||||| ||||| ||||| || || ||||| Sbjct 6013626 AATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTT 6013685 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| |||||||| || || || || || || ||||| || || Sbjct 6013686 TTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCAC 6013745 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 6013746 GAAAATTTGCATT 6013758 Score = 109 bits (120), Expect = 1e-18 Identities = 169/239 (71%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || ||||||| ||| ||| || || || || |||| Sbjct 6014211 CATG-CCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGT 6014269 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || | || || |||| ||| ||||| || ||||||| ||| |||||| | Sbjct 6014270 CAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGA---T 6014326 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| || ||||||||||| ||||| || ||||| || ||||| |||| || | Sbjct 6014327 CTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAG 6014386 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||| || || || ||||| || || || || || || || || || || ||||| ||| Sbjct 6014387 CTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATGATG 6014445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179611535782808