Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq14 109 5e-19 seq3 109 5e-19 seq54 107 2e-18 seq4 100 3e-16 >seq14 Length=6127344 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||||||||| | | || | | ||||| || || |||||| Sbjct 6013561 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCG 6013620 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || ||||| || || || |||||||| ||||| || || ||||| |||| Sbjct 6013621 GCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTT 6013680 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || || || ||||| | || | ||| || || || | |||| Sbjct 6013681 ACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTT 6013740 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||||||||||||| Sbjct 6013741 TTCACGAAAATTTGCATT 6013758 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||| |||||||| ||||||||||| || | | || | | ||| Sbjct 6013774 AGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCT 6013833 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || |||||||| |||| || ||||| || || || |||||||| ||||| || Sbjct 6013834 TCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCC 6013893 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | || || || || ||||| | || | ||| Sbjct 6013894 TGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTT 6013953 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||| ||||||||||||||| Sbjct 6013954 TTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||| |||||||| ||||||||||| || | | || | ||||| Sbjct 6014002 AGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCGTCT 6014061 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| || || ||| | || | || |||||||| |||||||| || ||||| ||| Sbjct 6014062 TCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCCTCTTTGTCT 6014121 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| || | ||| ||| || || ||||| | || | || Sbjct 6014122 TGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGATAGTT 6014181 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| ||||| || || ||||| Sbjct 6014182 TTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||| ||||| || ||||||||||| || | | || | | || Sbjct 6014230 AGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCC 6014289 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || ||| | || | || || || || |||||||| |||||||| ||| Sbjct 6014290 TCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCT 6014349 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | || ||| || ||||| || | || | ||| Sbjct 6014350 TGGA-TCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGT 6014408 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | |||||||| || |||||||| Sbjct 6014409 TTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 >seq3 Length=10655775 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||||||| | || |||||||| |||||||| ||||| | | || || ||||| Sbjct 2297763 AGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCT 2297822 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || || ||| | || | | |||||| || || || ||||||||||| ||| Sbjct 2297823 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCT 2297882 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | || || || || ||||| | || | |||| Sbjct 2297883 TGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTC 2297942 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || |||| ||||| || || || |||||| Sbjct 2297943 TTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | | || ||| || || |||| || |||||||| ||||| || || || | Sbjct 2294636 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGAT 2294695 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || ||||||||||| || |||| || | || || ||||||||| Sbjct 2294696 AAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGA 2294755 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| ||||||||||| ||| || || | || || || || || Sbjct 2294756 ATGCCTTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACC 2294815 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || || || || | |||||| || ||||| ||||| Sbjct 2294816 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | || ||||| || ||||| || || || | Sbjct 2297519 ACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGA 2297578 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | |||||||| || || ||||| | || | | |||||| || || || Sbjct 2297579 AAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGG 2297638 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| | ||| ||||| ||| ||| ||| | || || || || | Sbjct 2297639 GATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAAT 2297698 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | |||||| || |||| ||||| || ||||| |||||| Sbjct 2297699 TTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 2297747 >seq54 Length=1719504 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090 ||| || || | ||||||||| | |||||| | |||||| || |||| || | ||||| Sbjct 1012571 AAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTC 1012512 Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150 |||||| ||||| || || || || | || || |||||| || | || | ||| || Sbjct 1012511 GTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATT 1012452 Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG 154210 || | |||||||| || || | ||| || || |||||| ||| || || || || Sbjct 1012451 TCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATAAATTTGTCGG 1012392 Query 154211 TTGCACGTTCCACATGTCGTATTG 154234 || ||||||||||| || ||||| Sbjct 1012391 TTTAACGTTCCACATATCATATTG 1012368 >seq4 Length=9433735 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| ||||||||||| | | ||||| | || || ||||| |||||||| | | Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| ||||| || || || |||||||| || || || || || || ||| ||| || Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| ||| || || || | || | ||| || || || | ||||| |||| Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 6954574 AGATCTGCAT 6954565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499627087591840