Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq4 113 4e-20 seq14 87.8 2e-12 >seq3 Length=10655775 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || |||| | |||||||| | || || || ||||||||||||||||| Sbjct 2297975 TCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGA 2298034 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || ||||| |||||||| ||||||| ||||||||||| || || Sbjct 2298035 CAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGG 2298094 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| || || ||| ||| || ||| || | | |||| |||||| | | ||| | Sbjct 2298095 GATGCCTTCTTTATCCTGGATCTT-TGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAA 2298153 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | || | || || ||||||| || || || ||||||||||||| Sbjct 2298154 CTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGG 2298204 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| || | |||||||| | ||||| || || |||||||| || || Sbjct 2297520 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 2297579 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || |||||||| ||| ||||||||| ||||||||| || || Sbjct 2297580 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGG 2297639 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || |||| ||||| ||||| | |||| ||||| | ||| | | Sbjct 2297640 ATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATT 2297699 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || ||||| ||||| |||||||||||||| Sbjct 2297700 TCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | || | ||| | || || ||||| ||||| || ||||| Sbjct 2297747 TCCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGA 2297806 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| || || || || ||||||||||| ||||||||| ||||||||| || || Sbjct 2297807 AAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 2297866 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||||| ||||| | ||||| ||||| | ||| || Sbjct 2297867 GATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAAC 2297926 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || ||||| ||||| ||||| |||||||| Sbjct 2297927 TTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 2297974 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| |||||||| || ||| | || || ||| |||||||| || || Sbjct 2294666 GTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCC 2294725 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || || ||||||||||| ||||| || || || |||||| ||| Sbjct 2294726 GCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGTATTTTCGCCTTC 2294785 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | | ||||| || | || | ||||| || || |||||| Sbjct 2294786 ACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTT 2294845 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 2294846 TTGACAAAAATCTGCAT 2294862 >seq4 Length=9433735 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| || ||||||||| || ||||| ||| || |||||||| || ||| ||| Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | |||||| ||||| || || || |||||||||||| ||| || ||||| | | Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| || || | ||| || |||| ||| | ||||| || || || ||||| || | Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 127104 AAATCTGCATGG 127115 | |||||||||| Sbjct 6954574 AGATCTGCATGG 6954563 >seq14 Length=6127344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | |||||| || || ||||| ||||| || | || | | Sbjct 6014227 CGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCA 6014286 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || ||||| || |||||||| ||||||| || || ||||| ||||| || || || || Sbjct 6014287 TCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTA 6014346 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || |||| | ||||| ||||| | | || || || | ||| | Sbjct 6014347 TCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATG 6014406 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || || || ||||||||||| || |||||| Sbjct 6014407 GTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATG 6014442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475483943496640