Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27]
2,836 sequences; 317,690,795 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq14 136 4e-27
seq3 104 2e-17
>seq14
Length=6127344
Score = 136 bits (150), Expect = 4e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| || || | || || || || ||||| ||||| || || || || || |||
Sbjct 6013756 ATTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCG 6013815
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| ||||||||||| || ||| | |||| || || || |||||
Sbjct 6013816 GAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGT 6013875
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || ||||| || |||||||| || | ||| | |||||| |||| |||
Sbjct 6013876 GGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCG 6013935
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| |||| ||||| || || |||||||| || |||||||||||
Sbjct 6013936 ACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| || || | || |||| || || || ||||| |||||||| || |||||
Sbjct 6013531 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 6013590
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | ||| |||| |||||| || ||| | |||| || || || ||||| |||
Sbjct 6013591 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 6013650
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || ||||| || |||||||| || | ||| | |||||| |||| ||||||
Sbjct 6013651 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACT 6013710
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| |||| ||||| || || |||||||| || |||||||||||
Sbjct 6013711 TCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| || || | || || ||||| ||||| ||||| || || || || || |||
Sbjct 6013984 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCG 6014043
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | || ||||| ||||| || || | ||||| ||||||||||| ||
Sbjct 6014044 GAAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGA 6014103
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || ||||| ||||| || || ||| | ||||| ||||| |||| ||
Sbjct 6014104 GGAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCA 6014163
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | ||||| || || ||||| |||||||| || |||||
Sbjct 6014164 ACTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || || | || || ||||| ||||| |||||||| || || || || ||
Sbjct 6014212 ATGCCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCA 6014271
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| || | ||| ||||| || | ||||| ||||| || || ||
Sbjct 6014272 GAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGA 6014331
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| |||||||||||||| || || ||||| ||| | ||||| |||| ||
Sbjct 6014332 GGAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCC 6014391
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | ||||| || || || ||||||||||| ||||||||
Sbjct 6014392 ACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441
>seq3
Length=10655775
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || | || | || | ||| || || ||||||||||| ||||| |||||
Sbjct 2297973 ATTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCA 2298032
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| |||| || ||||| || | ||||| || ||||| || ||
Sbjct 2298033 GACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGT 2298092
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| |||||||||||||| || || ||| ||| | || | || | |||||| |||| |||
Sbjct 2298093 GGGATGCCTTCTTTATCCTGGATCTTTGCTTTTA-CGTTCTCGATGGTGTCAGAAGCCTC 2298151
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | || || ||||| | || || || ||||| |||||
Sbjct 2298152 AACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || ||||| || || |||||||| ||| | || ||| ||
Sbjct 2294654 ACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCT 2294713
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || ||| | || | || ||| || || || ||||||||||||||||||||
Sbjct 2294714 AGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGT 2294773
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| || | ||| | ||||| |||| ||||| || || |||| |||||
Sbjct 2294774 ATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTA 2294833
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || |||||||| |||||||| |||||
Sbjct 2294834 CCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | |||||||||| || ||||| || || || ||||||||
Sbjct 2297745 ATTCCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCA 2297804
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || || | ||||||||| || | ||||||| ||||| || ||
Sbjct 2297805 GAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGG 2297864
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || |||||||| ||||||||||| |||| ||| | ||||| || | |||
Sbjct 2297865 GGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCA 2297924
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | |||| || || || || || ||||| ||||| || |||||
Sbjct 2297925 ACTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 2297974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451987176486560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |