Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14 159 8e-34 seq3 132 1e-25 seq4 109 1e-18 >seq14 Length=6127344 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| | || | |||||| || || || ||||||| |||||| |||| | ||| Sbjct 6013537 CGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTT 6013596 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| || || |||||||| || |||||||| || ||||| |||||| Sbjct 6013597 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCC 6013656 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||||||| || ||| ||| ||||| |||||||| | ||| || || | Sbjct 6013657 TCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGG 6013716 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| |||||||||||||| |||||||| Sbjct 6013717 GTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTG 6013754 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || ||||| || || || || || || | ||||||||| | | ||| Sbjct 6013764 TCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGT 6013823 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||||| || || |||||||| || |||||||| || ||||| |||||| Sbjct 6013824 TCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCC 6013883 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| || ||| ||| ||||| |||||||| | ||| || || | Sbjct 6013884 CTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAG 6013943 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| |||||||||||||| |||||||| Sbjct 6013944 GGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTG 6013982 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| ||||| || || || || ||||| || | ||||||||||| | ||| Sbjct 6014221 CGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTT 6014280 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| || || |||||||| || ||||| | ||| || || || ||| ||| ||| Sbjct 6014281 CTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCT 6014340 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| || || ||||| ||||| | | ||| || || | Sbjct 6014341 TCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGG 6014400 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| ||||| Sbjct 6014401 GTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTG 6014438 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || || |||||||| || || ||||||||||| || ||| | |||| |||||| | ||| Sbjct 6013859 CTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAACATTCAG 6013800 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||||| || || |||||||| ||| || | |||||| Sbjct 6013799 AAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGA 6013764 >seq3 Length=10655775 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | |||||||| || |||||||| | ||||| |||| |||||| | ||| Sbjct 2297987 TCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCC 2298046 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||||||||||||| || ||||| | ||||||||| || || || |||||| Sbjct 2298047 ATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTT 2298106 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| |||||| || ||| |||| |||||| | | || || || | || || Sbjct 2298107 ATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTAT 2298166 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | || ||||| ||||| || Sbjct 2298167 GGTCTTCCCGGTCAATGTCTTCACGAAAATCTG 2298199 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||||| || |||||||| || || || || || || | || ||||| | ||||| Sbjct 2294641 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGT 2294700 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||| || |||||||| || ||||| || || | || || || ||| ||| || Sbjct 2294701 CCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCC 2294760 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || || || ||||||| ||| | ||||||| | ||| || |||| Sbjct 2294761 TTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAG 2294820 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| ||||||||||| |||||||| || Sbjct 2294821 CGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTG 2294859 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || ||||| || | || ||||||| | || | |||||||| || || |||||| Sbjct 2297550 GTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCG 2297609 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | | |||||| ||||| ||||||||| | ||||| || ||| Sbjct 2297610 GCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTATTGAATTTTGGCCTTG 2297669 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| ||||||| | || | ||||||||||| ||||| || || || ||| Sbjct 2297670 ACATTCTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATGGTCTTTCCTGTCAGGGTT 2297729 Query 199613 TTCACAAAAATTTG 199626 || |||||||| || Sbjct 2297730 TTGACAAAAATCTG 2297743 >seq4 Length=9433735 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||||| |||||| || | |||||| | |||||| |||||||| || |||||||||||| Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 || ||||| || || || |||||| || ||||| ||||| ||| || ||| Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 6954633 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | || || | | ||||| || | || || || |||||||| || |||||||| || Sbjct 6954632 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 6954573 Query 199622 ATTTG 199626 || || Sbjct 6954572 ATCTG 6954568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178878762410012