Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 seq14 93.3 3e-14 >seq3 Length=10655775 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| | || |||||||| | |||| ||| ||||| ||||| ||||| | | Sbjct 2297976 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGAC 2298035 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| |||| || || || |||| || |||||||||||||| | || Sbjct 2298036 AAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGG 2298095 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||| || || ||| ||| | || | | ||||| | || || Sbjct 2298096 ATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACT 2298155 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || || || || || || ||||| ||||||||| Sbjct 2298156 TCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 2298203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || ||||||||||| || ||| || || |||||||| || | Sbjct 2297520 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 2297579 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||| ||| | || || || | ||||||||||| ||| Sbjct 2297580 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGG 2297639 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | |||||||||| ||||| || | || | | ||||||| ||| || | Sbjct 2297640 ATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGC-CTCAAT 2297698 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || | ||||| || || |||||||| Sbjct 2297699 TTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | |||||| ||| |||||| || || |||||||| | Sbjct 2297748 CCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAG-- 2297805 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || || | || || | |||||| || |||| || || | ||||||||| | || Sbjct 2297806 AAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 2297865 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||||||||| ||||| || | | | | ||||||| || | Sbjct 2297866 GGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAA 2297925 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| ||||| || || || || | ||||| || ||||||||||| Sbjct 2297926 CTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 2297974 >seq14 Length=6127344 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/234 (70%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| || | ||| |||||| || || || || |||| Sbjct 6013759 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG-- 6013816 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| ||||||||||| ||| | ||||| | |||||| ||||||| Sbjct 6013817 --AAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGG 6013874 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTAATCG-TCGCTACTGTGTCTGCGCT 39665 || | || |||||||| | | |||| | |||| || | | | ||||||| Sbjct 6013875 TGGAATTCCCTCTTTGTC-CTGAATTTTGGCCTTTA--CGTTTTCGATGGTGTCTGAAGC 6013931 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | ||||| |||||||| || | |||||| ||||| || ||||| Sbjct 6013932 TTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| ||| | ||| |||||| || || || || |||| Sbjct 6013987 CCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG-- 6014044 Query 39553 AAAACGCGTTCA----TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| || ||||| ||||| || |||| || ||||| ||||| || | Sbjct 6014045 --AAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGG 6014102 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | || |||||||| || || ||| | | ||| |||||| | ||| Sbjct 6014103 AGGAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTC 6014162 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || ||||||||||| | ||| ||||| |||||||||||| Sbjct 6014163 AACTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 6014214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347357593603988