Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14 149 6e-31 seq4 123 2e-23 seq30 96.9 3e-15 >seq14 Length=6127344 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||| ||| |||| ||||| || | Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | || | ||||| | ||||||||||||||||| | || | Sbjct 6013926 AGACACCATCGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 6013868 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| |||||||| |||| || | | || || |||||||| Sbjct 6013867 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACA 6013808 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || ||| | ||||| || |||| |||||| | |||| || Sbjct 6013807 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 6013759 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||| ||| |||| ||||| || | Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | || | ||||| | ||||||||||||||||| | || | Sbjct 6013698 AGACACCATCGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 6013640 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| |||||||| ||||| || | | || || || |||| Sbjct 6013639 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 6013580 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||| ||| | || || || || || Sbjct 6013579 ACATCCAAAAAGAATCCACACTCCACTTAGT 6013549 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || || ||||| ||||| |||||| | || || || || | Sbjct 6014213 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCT 6014154 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| || |||| ||||||||||| ||||| | ||||| Sbjct 6014153 GACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCAG 6014094 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || |||||| |||| |||| | || || |||||||||| Sbjct 6014093 CAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAAC 6014034 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | ||||| ||| |||| |||||| | |||| || Sbjct 6014033 ATTCAGAAAGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGG 6013987 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| ||||| || |||||||||||| | || || || || | Sbjct 6014441 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 6014382 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| || |||| || ||||| || ||||| | || ||| Sbjct 6014381 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 6014322 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || || | | || || ||||||||| Sbjct 6014321 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 6014262 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| | ||||| ||| | || |||||| Sbjct 6014261 ATTCAGAAGGAATCTACGCTTCATCTTGTTCTGCGT 6014226 >seq4 Length=9433735 Score = 123 bits (136), Expect = 2e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| |||||||| ||| |||| || |||||| | Sbjct 6954565 ATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 6954624 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| ||||||||||| | || ||| Sbjct 6954625 GATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAA 6954684 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| |||||||||||||| || | ||||| | ||| |||||| Sbjct 6954685 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 6954744 Query 38424 ATCCAAAAGGAAGCGA 38439 |||||||| | |||| Sbjct 6954745 ATCCAAAAAGGTGCGA 6954760 >seq30 Length=3857846 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || || |||||||||||||| || | || ||||||| || ||||| || Sbjct 1771984 TCGTCTCGTGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTT 1772043 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 |||||||| ||||| ||||||||||| ||||||| ||||| || ||||| || || Sbjct 1772044 AGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCG 1772103 Query 133039 ACCAGGCGCTCGCCGAACGTGGC 133061 || | || ||| ||||| || Sbjct 1772104 ACTACACGTTCGGGAAACGTAGC 1772126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155068874240