Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq14 147 9e-30 seq3 147 9e-30 seq1 136 2e-26 seq6 134 5e-26 seq8 98.7 4e-15 >seq14 Length=6127344 Score = 147 bits (162), Expect = 9e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || ||||||||||| ||||| || || || ||| | || Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| ||| | || |||||||| || || || |||||||| || ||||| Sbjct 6013698 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 6013639 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | |||||| | || |||||||| |||||||| |||||| | | ||||| || Sbjct 6013638 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 6013579 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | || || | ||||| |||||||| ||| |||| Sbjct 6013578 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACT 6013540 Score = 127 bits (140), Expect = 8e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || ||||||||||| ||||| || || || ||| | || Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| ||| | || |||||||| || || || |||||||| || ||||| Sbjct 6013926 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 6013867 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | |||||| | || |||||| | |||||||| |||||| | | || || || Sbjct 6013866 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAA 6013807 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || |||||| Sbjct 6013806 CATTCAGAAAGAATCCACGCTTCAC 6013782 Score = 123 bits (136), Expect = 1e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || || || ||||| || ||||| ||||| || || ||||| || ||| | Sbjct 6014444 ATCATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCT 6014385 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||||| | || ||| | | ||| || || |||||||| ||||| |||||||| ||| Sbjct 6014384 TCTGACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGAT 6014325 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 ||||||||||| || || | || || ||||| || ||||| |||||| | | || || Sbjct 6014324 CAACAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTAC 6014265 Query 391227 AATATTGATAAGGATGCAACACTTCA 391252 || ||| | ||||| | || ||||| Sbjct 6014264 AACATTCAGAAGGAATCTACGCTTCA 6014239 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || ||||||||||| || ||||| |||||| | ||| Sbjct 6014213 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCT 6014154 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| || || ||||| || || || ||||||||||| || Sbjct 6014153 GACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCAG 6014094 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || || | || ||||| | ||||| || |||||| | | || || || Sbjct 6014093 CAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAAC 6014034 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | || || | || ||||| Sbjct 6014033 ATTCAGAAAGAATCCACGCTTCA 6014011 >seq3 Length=10655775 Score = 147 bits (162), Expect = 9e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || ||||||||||||||||| || || || ||| | || Sbjct 2294862 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 2294803 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| |||||||| ||||| |||||||| |||||| Sbjct 2294802 GACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAA 2294743 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | |||||||| | || || || || || |||||| | ||||| | || |||||| Sbjct 2294742 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 2294683 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | ||||||||| | ||| | |||| ||||| Sbjct 2294682 ATTCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGG 2294639 Score = 91.5 bits (100), Expect = 6e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| ||||| || || || ||||| | || ||||| |||| Sbjct 2297975 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATC 2297916 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || ||| | | || ||||||||||| || |||||||| || || ||||| Sbjct 2297915 AGACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCA 2297856 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | || |||||||||||||| || | || | | |||||||| Sbjct 2297855 GCAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAA 2297796 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | ||| | || |||| Sbjct 2297795 CATTCAGAAAGAATCCACATTGCATCTAGT 2297766 Score = 86.0 bits (94), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || ||||| ||||| || || || || || | || |||| | || Sbjct 2297747 AATGCAGATTTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAATTGAGGCGTC 2297688 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | | || ||||||||| | || |||||||| || || ||||| Sbjct 2297687 AGACACTATCGAGAATGTCAAGGCCAAAATTCAATACAAAGAAGGAATCCCCCCGGATCA 2297628 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || ||| | || ||||||||||||||||| | || | | || ||||| Sbjct 2297627 GCAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTATAA 2297568 Query 391229 TATTGATAAGGA 391240 |||| | ||||| Sbjct 2297567 TATTCAGAAGGA 2297556 >seq1 Length=15679321 Score = 136 bits (150), Expect = 2e-26 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || |||| |||||||| ||||| || | || | | ||||||| | |||| Sbjct 7089443 GTACTTATGAAAATGAAGGAAACTGCTGCGGCTTACTTAAATACTCCAGTAAAGAATGCT 7089384 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || ||||| || || ||||| |||||| | ||||| |||||||| |||||||| || Sbjct 7089383 GTTATCACTGTACCAGCGTATTTTAATGATTCTCAACGACAAGCAACGAAAGATGCTGGT 7089324 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || |||||||| || ||||||||||| | ||||||||||| || |||||||| || || Sbjct 7089323 CAGATTGCTGGATTGAATGTTCTTCGTGTAATTAATGAACCAACCGCAGCTGCACTTGCT 7089264 Query 451445 TATGGACTAGGAAAATCAA-AAGA 451467 |||||| | ||| || ||| |||| Sbjct 7089263 TATGGAAT-GGATAAACAAGAAGA 7089241 >seq6 Length=7673328 Score = 134 bits (148), Expect = 5e-26 Identities = 264/390 (68%), Gaps = 3/390 (1%) Strand=Plus/Minus Query 451216 TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275 |||||| ||||| | || ||||| ||| || || | || |||||||| | || || Sbjct 5419472 TTATAAGGGTGAGATGAAGACTTTCTTTCCCGAGGAGGTGTCCTCTATGGTCTTGACGAA 5419413 Query 451276 AATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 ||||| || || || || || | ||| | | || |||| || || ||||| Sbjct 5419412 GATGAAGGAGACGGCGGAGGCGTACCTGGGTAAAACTATAACAAATGCCGTCATCACTGT 5419353 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || |||||||||||||| | || | ||||| || || ||||| || ||||||||| Sbjct 5419352 GCCAGCTTATTTCAATGACTCTCAGAGACAAGCGACAAAGGATGCCGGCGCTATTGCTGG 5419293 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 ||||| ||||| |||| || || || || ||||| ||||| |||||||||| || | Sbjct 5419292 CTTAAACGTTCTCAGAATAATAAACGAGCCCACAGCCGCTGCGATAGCATATGGTCTTGA 5419233 Query 451456 AAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCA 451515 || ||| | ||| ||||| ||| || | | ||||| || ||||| || || Sbjct 5419232 TAA---AAAGGCTGCAGGTGAAAAGAATGTTCTGATCTTTGACTTGGGTGGTGGTACCTT 5419176 Query 451516 TGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGA 451575 ||| || | || | || || ||||| | || ||||| || | || ||| || Sbjct 5419175 TGACGTGTCGATTCTGACGATCGAGGATGGTATCTTCGAAGTGAAATCCACGGCTGGCGA 5419116 Query 451576 TACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||| || ||||| || ||||||| Sbjct 5419115 CACGCATCTTGGTGGTGAGGACTTTGATAA 5419086 Score = 86.0 bits (94), Expect = 2e-11 Identities = 242/367 (66%), Gaps = 6/367 (2%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTA-ACAGGTTC 452049 ||||| || || |||||||| |||||||| |||||||| || || ||||| || | | Sbjct 5418700 AATCCAGACGAGGCTGTTGCTTATGGTGCAGCAGTTCAGGCGGCCATTCTGCACGGCGAC 5418641 Query 452050 AGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGT 452109 | || ||| || | |||| | || | | || || || || |||| | || | Sbjct 5418640 AAATC-TGAGGAAGTCCAAGATCTACTTCTGCTGGACGTGACTCCGTTATCATTGGGTAT 5418582 Query 452110 TGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTT--CTATTCCTTGT 452167 ||| || ||||| || | ||||| | ||| ||||| ||||||| | || || Sbjct 5418581 TGAGACCGCTGGCGGCGTTATGACCACTTTGATTAA--GAGGAACACGACAATACCAACA 5418524 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 ||| ||| || || || | ||| ||||| |||||||| || || || || Sbjct 5418523 AAACAGACCCAGACGTTCACCACATACTCCGATAATCAACCAGGAGTGCTCATCCAGGTC 5418464 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA 452287 | ||| ||||| | || ||||| ||||||||||| || || ||||| || | Sbjct 5418463 TATGAGGGAGAGAGAGCGATGACGAAAGATAATAATATCCTTGGCAAATTTGAGCTGACG 5418404 Query 452288 AACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCA 452347 ||||||||| ||||| || ||| ||||| ||| | || | ||| | || || Sbjct 5418403 GGCATTCCTCCAGCACCAAGAGGTGTTCCGCAAATCGAAGTCACTTTCGATATCGACGCC 5418344 Query 452348 AATGGTA 452354 ||||||| Sbjct 5418343 AATGGTA 5418337 >seq8 Length=7313927 Score = 98.7 bits (108), Expect = 4e-15 Identities = 281/429 (66%), Gaps = 5/429 (1%) Strand=Plus/Plus Query 451178 GTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACT 451237 ||| ||||| | | || ||||| | || |||||| | || ||||| || || || ||| Sbjct 2114947 GTAATAAATGATACTGGCAAGCCAAAGATCCAAGTACAGTACAAAGGAGAGACGAAGACT 2115006 Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAA-TGAAAGAAACAGCAGAACA 451296 || || |||||| | || ||||| |||| ||||| |||| || || ||||| Sbjct 2115007 TTCTTCCCCGAAGAAGTGAGTTCGATGGT-CTTAGTAAAAATGAAGGAGACTGCAGAGGC 2115065 Query 451297 ATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGC 451356 ||| | || | || || | || || || || || |||||||| ||||| || | Sbjct 2115066 ATACTTAGGCAAGACTGTCACCAACGCTGTGATCACCGTCCCCGCTTACTTCAACGACTC 2115125 Query 451357 ACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416 || || || ||||| || || || || || | || |||||||| | || ||||| Sbjct 2115126 GCAGCGTCAGGCAACCAAGGACGCTGGTACCATCTCGGGCTTAAATGTATTGCGTATTAT 2115185 Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGa 451476 || || || || || || || | |||||||| || | || |||| || | || Sbjct 2115186 CAACGAGCCCACCGCCGCCGCAATTGCATATGGTCTCGACAAG---AAAGCCACCGGCGA 2115242 Query 451477 aaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT 451536 ||| | | | |||||| | ||||| || ||| || || | || | || Sbjct 2115243 GCGAAACGTCCTTATCTTTGATCTCGGTGGTGGCACTTTCGACGTGTCCATCCTGACTAT 2115302 Query 451537 TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||||||||| | || || || ||| | || || ||||||||| | || ||||| || Sbjct 2115303 TGAAGATGGTATCTTCGAGGTCAAGTCCACGGCGGGAGATACTCATTTGGGTGGTGAGGA 2115362 Query 451597 TATTGATAA 451605 ||||||| Sbjct 2115363 CTTTGATAA 2115371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975646609802288