Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6 271 6e-67 seq8 205 7e-47 seq1 113 3e-19 seq25 87.8 1e-11 >seq6 Length=7673328 Score = 271 bits (300), Expect = 6e-67 Identities = 797/1209 (66%), Gaps = 22/1209 (2%) Strand=Plus/Plus Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 |||||||||| || | ||| || |||||||| ||||| || || ||||| | || || | Sbjct 5418337 TACCATTGGCGTCGATATCGAAAGTGACTTCGATTTGCGGAACACCTCTTGGTGCTGGAG 5418396 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || || || | |||| | || || ||||||||||||| || | || || | Sbjct 5418397 GAATGCCCGTCAGCTCAAATTTGCCAAGGATATTATTATCTTTCGTCATCGCTCTCTCTC 5418456 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 |||| | | ||||| ||| | | ||||||||| || || || || || ||||| Sbjct 5418457 CCTCATAGACCTGGATGAGCACTCCTGGTTGATTATCGGAGTATGTGGTGAA-CGTCTGG 5418515 Query 517455 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | ||| || ||||| ||||| || | ||| | | ||||||||| || || || Sbjct 5418516 GTCTGTTTTGTTGGTATTGTCGTGTTCCTCTTAATCAAAGTGGTCATAACGCCGCCAGCG 5418575 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 || || | ||| | || | ||||| || || | || | | || ||| | ||| Sbjct 5418576 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAGAAGTAGATCTTGGA---CTTCC 5418632 Query 517574 TCAG-TTTG--ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 |||| |||| || ||||| || || |||| || |||||||| |||||||| || Sbjct 5418633 TCAGATTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGCCTCG 5418692 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 517689 || ||||||| | || || |||| || || || || |||| ||||| || || | Sbjct 5418693 TCTGGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAACTTCT-G 5418751 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 | || || || | || || || || |||| || || || || || | |||||| Sbjct 5418752 AATTTTTGGTATTCTAGTGGAACCACCGACTAGAACGATGCTGTGAACTTGAGCTTTATC 5418811 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809 || || | ||| | | | ||||| |||||||| ||| |||||||| || | Sbjct 5418812 CATCTTCGCATCTCTAAGAGCCTTTTCCACGGGTTCGAGAGTGCTTCTAAACAGATCAGC 5418871 Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 517867 || || || |||||| | |||||||| || || | || || ||||| || || ||| Sbjct 5418872 GCAGAGCTCCTCGAATCTGGCTCTAGT--GACCGATGTATAGAAGTCAATCCCCTCAAAC 5418929 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 517927 || ||||||| ||||| | | || ||||| || | | | || || | || Sbjct 5418930 AATGAATCAATCTCAATGCTTGCCTGCGTCGACGAGCTCAACGTTCTCTTTGCTCTCTCG 5418989 Query 517928 CATGCTGTCCTTAGTCTTCGTAAGGCT-TTTGCTGATTGATTCAAATCTGTTTTATATTT 517986 || || ||||| | | || | ||| | | | | || ||| |||| | || ||||| Sbjct 5418990 CAAGCAGTCCTCAAACGTCTCAGAGCTCTCTTGTTACTG-CTCAGATCTTTCTTGTATTT 5419048 Query 517987 TCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || ||||| |||| |||| ||| | || | || |||||||| || ||||| || Sbjct 5419049 CCTTTTGAATTCTT--GCACAAAATGGTTCACCATTCGGTTATCAAAGTCCTCACCACCA 5419106 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | ||| | | | |||| ||| | ||||| || | | || || Sbjct 5419107 AGATGCGTGTCGCCAGCCGTGGATTTCACTTCGAAGATACCATCCTCGATCGTCAGAATC 5419166 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 518164 | || ||| ||| |||||||||| ||||| || || |||||| |||| | Sbjct 5419167 GACACGTCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTTTTCACCTGCAGCC 5419226 Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||||||||||||||| || | ||||| || || || || || || ||||| | ||| Sbjct 5419227 TTTTTATCAAGACCATATGCTATCGCAGCGGCTGTGGGCTCGTTTATTATTCTGAGAACG 5419286 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | |||||||| || ||||| || || |||||||| || || || || ||||| Sbjct 5419287 TTTAAGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGAGTCATTGAAATAA 5419346 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || ||||| || ||||||| |||| |||||| | || || ||||| | Sbjct 5419347 GCTGGCACAGTGATGACGGCATTTGTTATAGTTTTACCCAGGTACGCCTCCGCCGTCTCC 5419406 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG-CTTGGATTCATT 518403 ||||| || | || | ||| || || | | || ||| || | | ||| ||| Sbjct 5419407 TTCATCTTCGTCAAGACCATAGAGGACACCTCCTC-GGGAAAGAAAGTCTTCATCTCACC 5419465 Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463 | ||| || |||| | | |||||| ||| |||| | || | |||||||||| Sbjct 5419466 CTTATAAGACACTTTGATTTTTGGTTTGCCGCCATCATTGACCACCGTGAATGGCCAGTG 5419525 Query 518464 TTTCATATC 518472 |||||| || Sbjct 5419526 TTTCATGTC 5419534 >seq8 Length=7313927 Score = 205 bits (226), Expect = 7e-47 Identities = 714/1100 (65%), Gaps = 16/1100 (1%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| |||||||| || || || ||| || || || || |||| | ||||| || Sbjct 2116182 ATTGGTAATAGTGATCTTGTTCTCCTTGCCAGTAGACTTGTCCACGGCGGAGACATTGAG 2116123 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 |||||| || ||||| | ||| || || || ||||| ||||| || || | | || || Sbjct 2116122 AATACCGTTCGCATCGATATCGAACGTCACCTCAATCTGAGGAACTCCACGAGGTGCTGG 2116063 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||| || || | | ||| | ||||| ||||||||| || || | || || Sbjct 2116062 TGGAATACCGCTAAGCTCGAATTTGCCCAGTAAATTATTATCCTTGGTCATGGCGCGCTC 2116003 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||||||| | | || || || | | |||||| || | ||||||||||| | Sbjct 2116002 ACCCTCGTATACCTGAATCAACACGCCGGGTTGATTGTCGGCGTAAGTTGTAAAGGTTTG 2115943 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 | | || || || || || || || | ||||| |||||| | |||||| || Sbjct 2115942 AGTCTGCTTCGTCGGGATGGTGGTATTCCTCTTAATAAGCGCGGTCATGACACCACCGGC 2115883 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 || || | ||| ||||| || ||||||||||| | | | | | ||| | | || Sbjct 2115882 AGTCTCAATACCCAGAGAGAGCGGAGTGACATCGAGCAAAAGCAAGTCTTGCACCTCCTC 2115823 Query 517573 ATCAGTT-TGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | || | ||| ||||| |||| || || | || || || ||||| ||||| ||| Sbjct 2115822 -TGATTTATCACCGTGCAAGA-TAGCCGCCTGTACTGCCGCGCCGTATGCCACAGCCTCA 2115765 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 517689 || ||||| | || || || || | ||| ||||||||||| | ||| | || || | Sbjct 2115764 TCGGGATTGATAGATTTGTTGAGCTCTTTGCCATTGAAAAAGTCTTGCAGGAGCTTCT-G 2115706 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 | || ||||| || | || ||||| ||||| || || ||||| | || | ||| || Sbjct 2115705 AATTTTGGGAATTCGCGTAGAGCCTCCGACTAAAACGATATCATGGATTTGAGCTTTGTC 2115646 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809 || || | || | |||||||||||||||||| | | || | || | Sbjct 2115645 CATCTTGGCGTCGCGCAGCGACTTTTCAACGGGTTCAAGAGTACCACGGAAGAGATCGGC 2115586 Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAA 517869 || ||||| ||||| ||||| || | | | | ||||||||||||| |||| Sbjct 2115585 GCAGAGTTCCTCGAAACGAGCTCGGGTGATGGAGGTGTAGAAATCAATTCCTTCATACAA 2115526 Query 517870 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 517929 ||||| | || || | | || || || || || || | || || |||||||| || Sbjct 2115525 CGAATCGATCTCGATGCTGGCCTGGGTGGAGGATGACAGGGTGCGCTTGGCACGTTCGCA 2115466 Query 517930 TGCTGTCCTTAGTCTTCGTAAG---GCTTTTGCT-GATTGATTCAAATCTGTTTTATATT 517985 ||||| | || | || ||| || ||| | || | ||||||| | || |||| Sbjct 2115465 GGCTGTGCGAAGACGACG-AAGTGCGCGTTTATTCGA---AGTCAAATCCTTCTTGTATT 2115410 Query 517986 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 518045 | | |||||| || | || | | || | || |||||||| || ||||| |||| Sbjct 2115409 TACGCTTGAATTCCTGTACGAAGTGATTGACCATGCGGTTATCAAAGTCCTCACCACCCA 2115350 Query 518046 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 518105 | | ||||| ||| | ||| | | || | ||| | |||||||||| || || | | Sbjct 2115349 AATGAGTATCTCCCGCCGTGGACTTGACCTCGAAGATACCATCTTCAATAGTCAGGATGG 2115290 Query 518106 TTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 518165 || || || |||||||| | |||||| ||||| || || || | | | | Sbjct 2115289 ACACGTCGAAAGTGCCACCACCGAGATCAAAGATAAGGACGTTTCGCTCGCCG-GTGGCT 2115231 Query 518166 TT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| || || || || || || || ||||| | ||| ||| Sbjct 2115230 TTCTTGTCGAGACCATATGCAATTGCGGCGGCGGTGGGCTCGTTGATAATACGCAATACA 2115171 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | || | || | || || || || || || || | || || ||||| || || Sbjct 2115170 TTTAAGCCCGAGATGGTACCAGCGTCCTTGGTTGCCTGACGCTGCGAGTCGTTGAAGTAA 2115111 Query 518285 GCAGGAACAGTAATAACGGC 518304 || || || || || || || Sbjct 2115110 GCGGGGACGGTGATCACAGC 2115091 >seq1 Length=15679321 Score = 113 bits (124), Expect = 3e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| |||| | |||||| | ||||| |||| ||||| || |||||||||||||| | Sbjct 7089237 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTAC 7089296 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | |||||| | |||||||| || |||||||| || ||||||| ||| ||||| Sbjct 7089297 ACGAAGAACATTCAATCCAGCAATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATC 7089356 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 |||||||| || || ||||| ||||| |||| ||||| Sbjct 7089357 ATTAAAATACGCTGGTACAGTGATAACAGCATTCTTTACT 7089396 Score = 102 bits (112), Expect = 6e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || ||||| || ||||| |||||||||||||||| |||||||| || || ||| Sbjct 7089259 CCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTACACGAAGAACATTCAATCCAGCA 7089318 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | | ||| ||| |||||||||| || | ||||||||||| ||||||||||| Sbjct 7089319 ATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATCATTAAAATACGCTGGTACAGTG 7089378 Query 322364 ATAACTGCTTTATT 322377 ||||| || || || Sbjct 7089379 ATAACAGCATTCTT 7089392 >seq25 Length=4385159 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 668854 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACG 668913 ||| || ||||| | ||| | |||||| ||||||| |||||||| || | ||||| || Sbjct 1128070 AGGAAAGGAAGGCAGGATTCGTGGAAATCTGATGGGTAAACGTGTGGACTTCTCTGCGCG 1128129 Query 668914 TACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTAT 668973 ||| ||||| ||| ||||||||||| | | | || |||| || || || | | ||| Sbjct 1128130 TACTGTTATCACTCCTGATCCCAATTTACGTATTGATCAAGTAGGCGTACCGCGCAGTAT 1128189 Query 668974 TGCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006 || ||||||| || || |||||| || || Sbjct 1128190 AGCGCAAAATCTGACATTCCCCGAAATCGTGAC 1128222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780681668338216