Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8 361 7e-95 seq6 291 1e-73 seq54 89.7 7e-13 seq1 87.8 2e-12 >seq8 Length=7313927 Score = 361 bits (400), Expect = 7e-95 Identities = 823/1226 (67%), Gaps = 24/1226 (2%) Strand=Plus/Minus Query 6584 TACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCA 6643 || ||||| || || | ||||| ||||||| || || || | || ||||| ||| Sbjct 2116241 TATTTTTCTGCTTCGTTCACCATTCTTTCAATATCCTCCTTGCTGAGTCGACCCTTGTCA 2116182 Query 6644 TTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 || ||||| || ||||| | || || | | ||| || | || ||||| | | Sbjct 2116181 TTGGTAATAGTGATCTTGTTCTCCTTGCCAGTAGACTTGTCCACGGCGGAGACATTGAGA 2116122 Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763 ||||| || ||||| | ||||||| | || | ||| || || || | ||||| | | Sbjct 2116121 ATACCGTTCGCATCGATATCGAACGTCACCTCAATCTGAGGAACTCCACGAGGTGCTGGT 2116062 Query 6764 GGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCA 6823 |||||||| | | || ||| | || |||||| | |||||| | | | | || ||| Sbjct 2116061 GGAATACCGCTAAGCTCGAATTTGCCCAGTAAATTATTATCCTTGGTCATGGCGCGCTCA 2116002 Query 6824 CCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT 6883 || || || || | ||| ||| | |||||||| || |||| ||| |||| Sbjct 2116001 CCCTCGTATACCTGAATCAACACGCCGGGTTGATTGTCGGCGTAAGTTGTAAAGGTTTGA 2115942 Query 6884 TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATA 6943 | ||| | || || || ||||| ||| ||||| || |||||| | |||||| | Sbjct 2115941 GTCTGCTTCGTCGGGATGGTGGTATTCCTCTTAATAAGCGCGGTCATGACACCACCGGCA 2115882 Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || || | || ||||| || || || || || | | | || |||||| || || Sbjct 2115881 GTCTCAATACCCAGAGAGAGCGGAGTGACATCGAGCAAAAGCAAGTCTTGCACCTCCTCT 2115822 Query 7004 TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCG 7063 ||||| ||||| || || || || | ||| |||||||| || ||||||||| Sbjct 2115821 GATTTATCACCGTGCAAGATAGCCGCCTGTACTGCCGCGCCGTATGCCACAGCCTCATCG 2115762 Query 7064 GGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATT 7123 || || || | ||| || || ||||| || || ||| | || | | | |||||| Sbjct 2115761 GGATTGATAGATTTGTTGAGCTCTTTGCCATTGAAAAAGTCTTGCAGGAGCTTCTGAATT 2115702 Query 7124 TTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATC 7183 || || ||||| || || || ||||| |||||||| |||| | || | ||| || ||| Sbjct 2115701 TTGGGAATTCGCGTAGAGCCTCCGACTAAAACGATATCATGGATTTGAGCTTTGTCCATC 2115642 Query 7184 TTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACAC 7243 || | ||| || || | ||||| || ||||| | | |||||| | || || Sbjct 2115641 TTGGCGTCGCGCAGCGACTTTTCAACGGGTTCAAGAGTACCACGGAAGAGATCGGCGCAG 2115582 Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 |||||||| ||||| || ||||| ||||| || |||||||||| || || || |||||| Sbjct 2115581 AGTTCCTCGAAACGAGCTCGGGTGATGGAGGTGTAGAAATCAATTCCTTCATACAACGAA 2115522 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || || || ||| | | || | | || || | || ||||| || || || || || Sbjct 2115521 TCGATCTCGATGCTGGCCTGGGTGGAGGATGACAGGGTGCGCTTGGCACGTTCGCAGGCT 2115462 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT---ATCTTTCTTATGTTTACGT 7420 || || | ||||||||| || || ||| ||| | ||| ||||| | |||||| Sbjct 2115461 GTGCGAAGACGACGAAGTGCGCGT---TTATTCGAAGTCAAATCCTTCTTGTATTTACGC 2115405 Query 7421 TTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || || || | |||||| | || | | | | ||| || || ||||||||||| Sbjct 2115404 TTGAATTCCTGTACGAAGTGATTGACCATGCGGTT---ATCAAAGTCCTCACCACCCAAA 2115348 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || ||||| ||||| || | ||||| || |||||||| ||||||| | | | || Sbjct 2115347 TGAGTATCTCCCGCCGTGGACTTGACCTCGAAGATACCATCTTCAATAGTCAGGATGGAC 2115288 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTG-- 7594 || || || || |||||||| || ||||| || || ||||| ||| ||| | || Sbjct 2115287 ACGTCGAAAGTGCCACCACCGAGATCAAAGATAAGGACGTT----TCGCTCGCCGGTGGC 2115232 Query 7595 -TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGAC 7652 ||||| |||||||| || || || || || || || || || || |||||||| || || Sbjct 2115231 TTTCTTGTCGAGACCATATGCAATTGCGGCGGCGGTGGGCTCGTTGATAATACGCAATAC 2115172 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 | || | ||| | || || | || || || || || || || ||||| ||||| |||| Sbjct 2115171 A-TTTAAGCCCGAGATGGTACCAGCGTCCTTGGTTGCCTGACGCTGCGAGTCGTTGAAGT 2115113 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 | || ||||| || | || |||| ||||| |||| || | || | || || | | Sbjct 2115112 AAGCGGGGACGGTGATCACAGCGTTGGTGACAGTCTTGCCTAAGTATGCCTCTGCAGTCT 2115053 Query 7773 CTTTCA-TTTTGGTAAGAACCATCGA 7797 | |||| |||| |||| |||||||| Sbjct 2115052 CCTTCATTTTTACTAAG-ACCATCGA 2115028 Score = 120 bits (132), Expect = 4e-22 Identities = 139/187 (74%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| |||||||||||||| ||| ||||| || ||||| ||||| |||||| Sbjct 2113583 AAAATGGTGTTGTTGGGGTTCATGGCGACTTGATTCTTGGCGGCGTCTCCGATGAGACGT 2113524 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || ||||||| || || || || ||| ||||| || || || || ||||| || Sbjct 2113523 TC---GGTTTCCGTGAAGGCCACATAGCTTGGCGTCGTGCGGTTGCCCTGATCGTTGGCG 2113467 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 ||||| || || | ||| ||| ||||||| ||||| || || ||||| || | ||| Sbjct 2113466 ATAATCTCGACCTTGCCGTGTTGAAAGACGCCAACGCAGGAGTAAGTTGTGCCAAGATCG 2113407 Query 8138 ATACCGA 8144 ||||||| Sbjct 2113406 ATACCGA 2113400 Score = 89.7 bits (98), Expect = 7e-13 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || || || || || || || || || ||||||||| | ||| Sbjct 2166574 ATCGAAATCTTCGCCTCCTAAATGAGTGTCACCATTAGTGGCAACGACTTCAAACACACC 2166515 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||| | | ||| || ||||| || ||||| ||||||||||| | ||||| Sbjct 2166514 GTTGTCAATAGTGAGCAAACTGACGTCAAAAGTGCCACCGCCCAGGTCAAACACCAGTAC 2166455 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| ||||| || || || | ||| || || || || || || || || || Sbjct 2166454 GTTTTTCTCGCCGTCT---TTTTTGTCCAAACCATATGCAATTGCAGCGGCAGTCGGCTC 2166398 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 ||||||||| | | | || ||||| ||| || | ||||| || || || ||| Sbjct 2166397 ATTAATAATTCTCATTACGACCAAGCCAGAAATTGTCCCAGCATCCTTGGTGGCCTGT 2166340 >seq6 Length=7673328 Score = 291 bits (322), Expect = 1e-73 Identities = 740/1117 (66%), Gaps = 24/1117 (2%) Strand=Plus/Plus Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764 ||||||| || || | |||||| | || | ||||| || ||| || ||||| | | Sbjct 5418337 TACCATTGGCGTCGATATCGAAAGTGACTTCGATTTGCGGAACACCTCTTGGTGCTGGAG 5418396 Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824 |||| ||||| | |||||| | ||||| | | | ||||| ||| | || | || | Sbjct 5418397 GAATGCCCGTCAGCTCAAATTTGCCAAGGATATTATTATCTTTCGTCATCGCTCTCTCTC 5418456 Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT- 6883 | |||||||| | || ||| | ||||||||||| || | ||| | || Sbjct 5418457 CCTCATAGACCTGGATGAGCACTCCTGGTTGATTATCGGAGTATGTGGTGAACGTCTGGG 5418516 Query 6884 TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATA 6943 ||| | || | ||| || ||||| || ||| ||| | | |||||||| || || Sbjct 5418517 TCTGTTTT-GTTGGTATTGTCGTGTTCCTCTTAATCAAAGTGGTCATAACGCCGCCAGCG 5418575 Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAAC------A 6997 || || | || | || | || |||||||||| || | || ||||| || | Sbjct 5418576 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAGAAGTAGATCTTGGACTTCCTCA 5418635 Query 6998 GATTCGTTCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGACCGC 7056 |||| || || || ||| |||| || || || | || || || || || || Sbjct 5418636 GATTTGTCGCC-------GTGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGC 5418688 Query 7057 CTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC-GA--TAACAT 7113 ||| || || ||||| | ||| |||||||| || |||||||| |||| || |||| | Sbjct 5418689 CTCGTCTGGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAACTT 5418748 Query 7114 TTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGA 7173 || |||||| || |||| || || |||||||| | |||||| | |||| | Sbjct 5418749 CTG---AATTTTTGGTATTCTAGTGGAACCACCGACTAGAACGATGCTGTGAACTTGAGC 5418805 Query 7174 TTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAA 7233 |||||| ||||| | |||| ||| | ||||| || ||||| | | | | |||| Sbjct 5418806 TTTATCCATCTTCGCATCTCTAAGAGCCTTTTCCACGGGTTCGAGAGTGCTTCTAAACAG 5418865 Query 7234 GTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTC 7293 || || || ||||| || | || | || | ||||||||||| |||| || || Sbjct 5418866 ATCAGCGCAGAGCTCCTCGAATCTGGCTCTAGTGACCGATGTATAGAAGTCAATCCCCTC 5418925 Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353 | || |||||||| |||||| ||| || | || ||| ||||||| |||||| | Sbjct 5418926 AAACAATGAATCAATCTCAATGCTTGCCTGCGTCGACGAGCTCAACGTTCTCTTTGCTCT 5418985 Query 7354 CTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATG 7413 ||| || || || | ||||| | || || | | ||||| | | ||||||||| | Sbjct 5418986 CTCGCAAGCAGTCCTCAAACGTCTCAGAGCTCTCTTGTTACTGCTCAGATCTTTCTTGTA 5419045 Query 7414 TTTACGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472 ||| | ||| || |||| || | || || | | || ||| || || ||||||| Sbjct 5419046 TTTCCTTTTGAATTCTTGCACAAAATGGTTCACC-ATTCGGTTATCAAAGTCCTCACCAC 5419104 Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532 | | || || || || || || | ||| ||||| |||||||| | || || | | | Sbjct 5419105 CAAGATGCGTGTCGCCAGCCGTGGATTTCACTTCGAAGATACCATCCTCGATCGTCAGAA 5419164 Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592 ||| || ||||| ||||||||||||| |||||| || || || ||| | || | | Sbjct 5419165 TCGACACGTCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTTTTCACCTGCAG 5419224 Query 7593 TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGAC 7652 || ||||| ||||| || || || || || || || || || || || || | ||| Sbjct 5419225 CCTTTTTATCAAGACCATATGCTATCGCAGCGGCTGTGGGCTCGTTTATTATTCTGAGAA 5419284 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 ||| | ||||||||||| | ||||| || |||||||||| || || || || || | Sbjct 5419285 CGTTTAAGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGAGTCATTGAAAT 5419344 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 | || || || || | ||| || | || | | ||||| || |||| ||||| | | Sbjct 5419345 AAGCTGGCACAGTGATGACGGCATTTGTTATAGTTTTACCCAGGTACGCCTCCGCCGTCT 5419404 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | ||||| || || | ||||| || || | ||| || Sbjct 5419405 CCTTCATCTTCGTCAAGACCATAGAGGACACCTCCTC 5419441 Score = 93.3 bits (102), Expect = 5e-14 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 22431 AAAAACGTGT-AAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489 ||||| ||| ||||||||||| ||||| ||||| || || ||||| |||||| ||| Sbjct 4014627 AAAAATCTGTGAAATTTTATCATGCATCAACATCCGAACTTTACGGCAAAGTACTGGAAG 4014686 Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 |||||||| |||||| ||||| ||||| || || || |||||||| Sbjct 4014687 TTCCACAAACTGAAAAGACACCATTTTATCCACGCTCTCCATATGG 4014732 >seq54 Length=1719504 Score = 89.7 bits (98), Expect = 7e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 105955 GTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCG 106014 |||| |||||| || |||||||||| ||||| | || | | || || || | Sbjct 1010882 GTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATTA 1010823 Query 106015 TATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAG 106074 |||||||| | ||| | |||||| || | | |||||||||||| ||| || | ||| | Sbjct 1010822 TATGTTTCTATGACTTTATCAATGTCATTTTCATGAATACCAACAGCTACTCTCATCAAC 1010763 Query 106075 AGATATTGGGGTGTTTCAATAATTTCACCGTCAATTTTCTGGAGATACCCTTTTTCAAGT 106134 | || ||| || | || | || | ||| | |||||| | || || | | | ||||| Sbjct 1010762 ATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGGTAACTTCTCTCAAGC 1010703 Query 106135 GTTTTTAAACCAAAATACCCAAACTCAAAATCACGTTCG 106173 ||||| ||||||| ||| | | | |||||||| ||| Sbjct 1010702 GTTTTAAAACCAATATAATTATAATTGAAATCACGATCG 1010664 >seq1 Length=15679321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 ||||| | || || || | || || || |||||||||||||| | ||||||| ||| Sbjct 7089250 TTATCCATTCCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTACACGAAGAACATTC 7089309 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 | |||||||| | ||||||||||| ||||||||||| ||||| ||||| || || Sbjct 7089310 AATCCAGCAATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATCATTAAAATACGCT 7089369 Query 7718 GGGACCGT 7725 || || || Sbjct 7089370 GGTACAGT 7089377 Score = 82.4 bits (90), Expect = 1e-10 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 6678 CCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAA 6737 |||||||| || ||||| || ||||||||||||||| | |||||| |||| | | Sbjct 7087884 CCTTATCTCTGGCTGATACATGCACAATACCATTTGCATCGATATCGAATGTTACTTCTA 7087943 Query 6738 TTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAAC 6797 |||||||| |||||| ||||| | ||||||||| | | |||| || || | Sbjct 7087944 TTTGTGGTACACCCCTTGGTGCAGGTGGAATACCAACAAGACTAAATTGTCCTAGAAGCT 7088003 Query 6798 TGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAAT 6840 ||||||| | ||| | | || || |||| || |||||||| Sbjct 7088004 TGTTATCACTAGCCATTTCTCGCTCGCCTTGATGAACTTTAAT 7088046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635110284542240