Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq30 89.7 6e-13 seq54 87.8 2e-12 seq20 84.2 3e-11 >seq30 Length=3857846 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 |||| || || ||||| || || || |||||| || || ||||||| ||||| ||||| Sbjct 1771982 CTTCGTCTCGTGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 1772041 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAG 119634 |||||||||| ||||| ||||| ||| |||||||| ||||| || || || | Sbjct 1772042 TTAGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATG 1772101 Query 119635 CGAATAGACGCTCAGCAAA 119653 ||| || ||| || | ||| Sbjct 1772102 CGACTACACGTTCGGGAAA 1772120 >seq54 Length=1719504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 203/302 (67%), Gaps = 7/302 (2%) Strand=Plus/Minus Query 110173 GGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCA 110232 || |||||||| |||||||| || ||||| || || | |||| || | Sbjct 1011988 GGATAAAAGTTAACATCGATGACTTTATCTAGATTACGAGTGACGATTTTCGCGACTGTT 1011929 Query 110233 TGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGA-CATATTTGGGGAGAGCAAT 110291 | ||||| ||| ||||||| ||||| || || ||| || ||| || || ||| || Sbjct 1011928 TTAAGTTTATCGAAATCGAAAGTTTTAGTGTCATTAACGAACATGTT----GACAGCGAT 1011873 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG-GTGTATTCCAAAATTTCCGTAC 110350 ||| || | |||||| |||| | || || | | | |||||| | |||||| || | Sbjct 1011872 AGATGCTAAATTGCATACAGC-GACTTCTCCAGGACCCGAGTATTCAATAATTTCAGTGC 1011814 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 |||||||| | |||| || | | || ||||||||||| |||||| || Sbjct 1011813 ACAAGTTGCTGCATTTAACAGTGCCTATATGCTGATGATTCGATTTTCGGTTGCAATGAT 1011754 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 | || || ||||| || || || |||||||| || ||| |||||||||| ||||| Sbjct 1011753 CTTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTGGGACCTGAGAATGGCGAGCCATA 1011694 Query 110471 CA 110472 || Sbjct 1011693 CA 1011692 >seq20 Length=5370898 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/149 (73%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 168442 GGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTC 168501 ||||||| ||||| | |||||| || | | | | ||| | ||||| | |||||| Sbjct 502016 GGAAATATGCCATATTTATCTCTGCCTATGGAAGCAATACCGGATACAGCCATTGTTTTC 502075 Query 168502 GCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCA--GACTGTGCCGTACCAGCTT 168559 |||||||| ||||| |||| |||||||| || ||||| || | ||| || || || | Sbjct 502076 GCTGAATCTCCCTCAGTCAAAATGAGTGTGCA--TTCCAGTGATTTTGCAGTTCCTGCAT 502133 Query 168560 TGTTCGCATCGTCCAATTTGGGGATACCA 168588 || ||||| || |||||||| |||||| Sbjct 502134 CATTGGCATCTTCTAATTTGGGTATACCA 502162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588955120800800