Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq14 163 6e-35 seq3 161 2e-34 >seq14 Length=6127344 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || |||||| ||||| || || || || ||||| ||||| || | ||||||||| ||||| Sbjct 6014229 CAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATC 6014288 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || || ||||| || || ||||| | |||||||| ||||||||||| |||||||| || Sbjct 6014289 CTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATC 6014348 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||||| || || || ||||| ||| |||||| |||||||| | || Sbjct 6014349 TTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGT 6014408 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | |||||||| || | |||||| Sbjct 6014409 TTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| || ||||| ||||| ||||| ||||| ||||| |||| ||||||||| || || Sbjct 6014001 CAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCGTC 6014060 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| || ||||| | ||||| ||||| |||||||| || |||||||| Sbjct 6014061 TTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCCTCTTTGTC 6014120 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || || || || || || ||||| ||| ||| ||||||||||| | || Sbjct 6014121 TTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGATAGT 6014180 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| ||||| || | ||||| Sbjct 6014181 TTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 >seq3 Length=10655775 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||||||||||| || || ||||| |||||||| || |||| | ||| Sbjct 2294641 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGT 2294700 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || ||||| || |||| |||||| || ||||||||||| Sbjct 2294701 CCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCC 2294760 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| ||||| ||| ||||| ||||| ||||| ||| ||| || || || Sbjct 2294761 TTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAG 2294820 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | |||||| || || | ||||| Sbjct 2294821 CGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || ||||||||||||||||| | | ||| | |||||||| |||||| Sbjct 2298000 TGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCATCTTCCAGCTGC 2298059 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || || || || || || ||||||||||| || || || ||| Sbjct 2298060 TTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGGATCTTT 2298119 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || |||||||| |||||||| ||| || |||||||| || | ||||| || ||| Sbjct 2298120 GCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTCCCGGTC 2298179 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 2298180 AATGTCTTCACGAAAATCTGCAT 2298202 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| ||||| || ||||| | ||| || | || ||||| || || || || Sbjct 2297778 GTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCA 2297837 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || || || ||||| || || |||||||||||||||||||| |||| Sbjct 2297838 GCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTG 2297897 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || ||||| || || ||||| | |||| ||||||||||||| ||| Sbjct 2297898 ACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTCAGGGTT 2297957 Query 195124 TTTACGAACACTTGCATT 195141 || || || | |||||| Sbjct 2297958 TTGACAAAGATCTGCATT 2297975 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || || |||||||| || || | ||| || | |||||||| || || || || Sbjct 2297550 GTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCG 2297609 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || || || || || || |||||||||| ||||||||| |||| Sbjct 2297610 GCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTATTGAATTTTGGCCTTG 2297669 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||| || ||||| || || | ||| | || | ||||||||||||| ||| Sbjct 2297670 ACATTCTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATGGTCTTTCCTGTCAGGGTT 2297729 Query 195124 TTTACGAACACTTGCATT 195141 || || || | |||||| Sbjct 2297730 TTGACAAAAATCTGCATT 2297747 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||||||| | || | ||||| ||||| ||||||||||| || | ||| || | Sbjct 2294873 AGCCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGA 2294932 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || || || || |||||||| | | |||||||| || || || ||||| Sbjct 2294933 CCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATTCCTTCC 2294992 Query 195043 TTGTCTT 195049 ||||||| Sbjct 2294993 TTGTCTT 2294999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109441285599212