Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq30 116 4e-21 seq54 111 2e-19 >seq30 Length=3857846 Score = 116 bits (128), Expect = 4e-21 Identities = 146/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||| || ||||||||||||||||| || || ||||| || || ||||| | |||||| Sbjct 1773244 GTACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTC 1773303 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | || | ||||| | ||||| || | | ||| |||||||| || ||||| Sbjct 1773304 GGAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGA 1773363 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT--- 19430 ||| |||||||||||||| ||||| |||||| |||| ||||| || ||| | | Sbjct 1773364 AGCGGCAAAAAATGCTAAAACATGAGAGATAAAACGTTTCTCATCGGAATTTAGTTTTTC 1773423 Query 19431 ATTCCAATCATTAATATCTT 19450 |||||| || || | |||| Sbjct 1773424 ATTCCAGTCCTTCTTGTCTT 1773443 >seq54 Length=1719504 Score = 111 bits (122), Expect = 2e-19 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| ||||| ||||| |||||||||||| | ||| | | ||||||||| ||||| Sbjct 1012589 ATGTGGATTGACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGT 1012530 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||| ||||| || ||||| || ||||| ||||| || || || || || || ||||| | Sbjct 1012529 ATACGGTTCAATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGG 1012470 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 ||| | ||| | |||||||||||| | ||| |||| | ||| Sbjct 1012469 TGCTATTAAAAGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCA 1012410 Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 |||||| | || || || ||| ||||| | ||||||||||||||| Sbjct 1012409 ATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGAAGAAT 1012362 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || ||||| ||| ||| | ||| | | |||||||| ||||| || ||||| |||| Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 || || || || | ||||||||||| || || ||| || || || ||| ||| Sbjct 1010843 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAATA 1010784 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 || | || ||| | ||| ||||||| |||||| || || || || || ||| |||||| Sbjct 1010783 CCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTC 1010724 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 | || || | | || | ||||||||||||| ||| || || ||||| Sbjct 1010723 AGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA 1010673 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 ||| |||| || |||||||| | ||| || | ||||| |||||||||||||| ||||| Sbjct 1011279 CCAATATTTCTCTTAAGTTCCAAAAAATCGAAAATATCGGCATGCCATGGTTCCAAATAA 1011220 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | || |||| ||||||||| |||||||| | ||| |||| ||| ||| Sbjct 1011219 ATAGCAAACGCTCCGGGTCTTTTATTACCGCCTTGATCAACATAGATGGCCATATCATTA 1011160 Query 48393 TA-AACTCTTAACATTGGGACAATACCATT 48421 || |||| |||| || | || | |||||| Sbjct 1011159 TACAACT-TTAAAATAGAAACCAAACCATT 1011131 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 ||||||| || |||||||| |||||||| ||| || |||| |||||| ||||| || Sbjct 1012901 ATATGAACGTTTAGAGATTGCGACTGATCAACAAAAGCTCCTCGATCAGCCGCCATTTCG 1012842 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199 | ||| || |||| ||||||||||| || || || |||| Sbjct 1012841 AGAATTACTTTTTGCGGTATCTCCCAGACCGTCTTGTAAA 1012802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562088873243040