Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 208 6e-48 seq1 154 1e-31 seq3 129 5e-24 seq14 127 2e-23 seq8 93.3 3e-13 >seq6 Length=7673328 Score = 208 bits (230), Expect = 6e-48 Identities = 525/784 (67%), Gaps = 22/784 (3%) Strand=Plus/Minus Query 551799 CATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTA 551856 ||||||||||| || || |||||||| || |||| | ||| |||| |||| || | Sbjct 5419111 CATCTTGGTGGTGAGGACTTTGATAACCGAATGGTGAACCATTTTGTGC--AAGAATTCA 5419054 Query 551857 AACGAAAAAACAAAGTTGATCT-ATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACT 551915 || | ||| |||| ||||| | | | | | |||||| | ||| | || ||| Sbjct 5419053 AAAGGAAATACAAGAAAGATCTGAGCAGTAACAAG-AGAGCTCTGAGACGTTTGAGGACT 5418995 Query 551916 GCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGT--ACTCAAACCACTATTGAAGTAG 551973 |||||||| ||||| || ||| | || | || || || || | | ||||| | | Sbjct 5418994 GCTTGCGAGAGAGCAAA--GAGAACGTTGAGCTCGTCGACGCAGGCAAGCATTGAGATTG 5418937 Query 551974 ATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATA 552033 ||||||| |||||||| ||||| | |||| | | | || |||| ||| || || Sbjct 5418936 ATTCATTGTTTGAGGGGATTGACTTCTATACATCGGTCACTAGAGCCAGATTCGAGGAGC 5418877 Query 552034 TTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAA 552093 | || ||||||| ||||||| || | ||||| || ||| | | | | |||||| | | Sbjct 5418876 TCTGCGCTGATCTGTTTAGAAGCACTCTCGAACCCGTGGAAAAGGCTCTTAGAGATGCGA 5418817 Query 552094 AGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTA 552153 |||| |||||| | |||| || || || || || ||||| || || ||||| || | Sbjct 5418816 AGATGGATAAAGCTCAAGTTCACAGCATCGTTCTAGTCGGTGGTTCCACTAGAATACCAA 5418757 Query 552154 AAATTCGCGAAATG---TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 |||||| ||| | | ||| | || ||| || || || || | || || ||| Sbjct 5418756 AAATTCA-GAAGTTACTTCAAGAT-TTCTTT-AACGGCAAGGAACTGAACAAATCCATTA 5418700 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG--ACA 552268 ||||||| ||||||||||| |||||||| ||| |||| || || ||||| || ||| Sbjct 5418699 ATCCAGACGAGGCTGTTGCTTATGGTGCAGCAGTTCAGGCGGCCATTCTGCACGGCGACA 5418640 Query 552269 AA-CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 || |||| ||| | ||| || | | || | || || ||||| |||| | ||| Sbjct 5418639 AATCTGAGGAAG---TCCAAGATCTACTTCTGCTGGACGTGACTCCGTTATCATTGGGTA 5418583 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | || || | ||| || ||||||| | | | || | || || || || || || | Sbjct 5418582 TTGAGACCGCTGGCGGCGTTATGACCACTTTGATTAAGAGGAACACGACAATACCAACAA 5418523 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 || | | | || | || || || ||||||||| | | || || || | | Sbjct 5418522 AACAGACCCAGACGTTCACCACATACTCCGATAATCAACCAGGAGTGCTCATCCAGGTCT 5418463 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 ||| ||||| ||| | || |||||||||||| ||||| | ||| | | | Sbjct 5418462 ATGAGGGAGAGAGAGCGATGACGAAAGATAATAATATCCTTGGCAAATTTGAGCTGACGG 5418403 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 | |||||||| || || | || || |||||||| ||||| |||||||||||||| |||| Sbjct 5418402 GCATTCCTCCAGCACCAAGAGGTGTTCCGCAAATCGAAGTCACTTTCGATATCGACGCCA 5418343 Query 552568 ATGG 552571 |||| Sbjct 5418342 ATGG 5418339 >seq1 Length=15679321 Score = 154 bits (170), Expect = 1e-31 Identities = 124/150 (83%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||| | | |||| || || ||||||||||| ||||||||||| || ||||| ||||| || Sbjct 7089396 AGTAAAGAATGCTGTTATCACTGTACCAGCGTATTTTAATGATTCTCAACGACAAGCAAC 7089337 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 ||||||||||| | ||||||||| | |||||||||||| | || |||||||| || || Sbjct 7089336 GAAAGATGCTGGTCAGATTGCTGGATTGAATGTTCTTCGTGTAATTAATGAACCAACCGC 7089277 Query 550510 TGCTGCACTTGCATATGGACTTGATAAACA 550539 ||||||||||| |||||| | |||||||| Sbjct 7089276 AGCTGCACTTGCTTATGGAATGGATAAACA 7089247 Score = 91.5 bits (100), Expect = 1e-12 Identities = 176/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 ||| | |||||| |||| ||| | | || | | ||| | | ||||| ||||| ||| Sbjct 7088160 GGTATTGAAACACTTGGTGGTGTATTTACGAGATTGATCTCTCGTAATACAACTATACCT 7088101 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 || ||| || |||||||||||| | ||| |||||| || ||| || Sbjct 7088100 ACAAAGAAAAGTCAGGTATTTTCTACGGCAGCGGATGGTCAAACACAAGTCGAGATTAAA 7088041 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 || | |||| || || || | ||| ||||| || | || || |||| | | Sbjct 7088040 GTTCATCAAGGCGAGCGAGAAATGGCTAGTGATAACAAGCTTCTAGGACAATTTAGTCTT 7087981 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 | |||||||| ||||| || | || ||||| ||||| ||||| || |||||||||||| Sbjct 7087980 GTTGGTATTCCACCTGCACCAAGGGGTGTACCACAAATAGAAGTAACATTCGATATCGAT 7087921 Query 552564 GCCAATGGAATTTTGAATGT 552583 || ||||| ||| || |||| Sbjct 7087920 GCAAATGGTATTGTGCATGT 7087901 >seq3 Length=10655775 Score = 129 bits (142), Expect = 5e-24 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || || || |||||||| ||||| ||| |||||| |||||| || || | || ||| Sbjct 2294642 CTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGTC 2294701 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||| || || || || || || ||||| |||||||| ||||| |||||||| ||| Sbjct 2294702 CGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCT 2294761 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAG 563432 ||||||||||| ||||| || || ||||| || || | | || || || Sbjct 2294762 TCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGAC-CTCCAG 2294820 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| |||||||||||| |||||||| || ||||| |||||| Sbjct 2294821 CGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCATA 2294863 Score = 102 bits (112), Expect = 7e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || ||||| | || |||||| ||| || ||||||| || || | Sbjct 2297757 AGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGG 2297816 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||||||||| ||||| || | ||| |||||||| || || ||||||||| Sbjct 2297817 CCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCT 2297876 Query 563377 TTATCTTGAATTTT 563390 || ||||||||||| Sbjct 2297877 TTGTCTTGAATTTT 2297890 Score = 98.7 bits (108), Expect = 8e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| || | ||| | |||| ||| || |||||| || |||| || || | Sbjct 2297531 ACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACC 2297590 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||||||||||||||||||||| || || | ||| |||||||| || || ||||||||||| Sbjct 2297591 ATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTT 2297650 Query 563379 ATCTTGAATTTT 563390 | ||||||||| Sbjct 2297651 GTATTGAATTTT 2297662 Score = 93.3 bits (102), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 563282 TTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAA 563341 || |||| | |||||||||||||| | ||| | | |||||| || || ||||| |||| Sbjct 2298011 TTCCTTTTG-AATATTGTAATCAGACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAA 2298069 Query 563342 AAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTG 563401 | || | | ||||||||||| || || ||||||||||| || || ||| |||||| Sbjct 2298070 AGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGT 2298129 Query 563402 CCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAA 563461 ||| || || |||| | ||| ||||| | || || || || | || || | Sbjct 2298130 TCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCA 2298189 Query 563462 CGAAAATTTGCAT 563474 ||||||| ||||| Sbjct 2298190 CGAAAATCTGCAT 2298202 >seq14 Length=6127344 Score = 127 bits (140), Expect = 2e-23 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || || ||||| || |||||| ||| ||||| || | |||||||| Sbjct 6013768 AGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTG 6013827 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | |||||| ||||| ||||| || | || ||||| || |||||||| ||| Sbjct 6013828 CCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCT 6013887 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || |||||||| ||||| || || || || | | | | |||||| || Sbjct 6013888 TTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAA-GCTTCGACTTCGAGGGT 6013946 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||||||||| |||||||| |||||||||||||| Sbjct 6013947 AATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 Score = 125 bits (138), Expect = 6e-23 Identities = 144/190 (76%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || |||||||||| |||||||| |||||| |||||||| ||||| ||||| Sbjct 6013571 TTTGG--ATGTTGTAATCAGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAAT 6013628 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 || | || ||||| || |||||||| ||||| || |||||||| ||||| || Sbjct 6013629 CAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTC 6013688 Query 563406 AATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 || || || | | | | |||||| |||| ||||||||||| |||||||| |||| Sbjct 6013689 GATGGTGTCTGAA-GCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGA 6013747 Query 563465 AAATTTGCAT 563474 |||||||||| Sbjct 6013748 AAATTTGCAT 6013757 Score = 118 bits (130), Expect = 9e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || ||||||||||| ||| ||| || ||| ||||| |||| |||||||| Sbjct 6014224 AGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTG 6014283 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || ||||| ||||| ||||| || | | ||| ||||| |||||||| |||||| Sbjct 6014284 CCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCT 6014343 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 |||||||| || || ||| || || || || |||| | | || || || || Sbjct 6014344 TTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAG-AAGCTTCCACCTCAAGGGT 6014402 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| ||||| || ||||| || || |||||||| Sbjct 6014403 GATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 Score = 111 bits (122), Expect = 1e-18 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| || |||||| ||| ||||| || | |||||||| Sbjct 6013996 AGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTG 6014055 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| | ||||| || ||||| || | | |||||| ||||||||||| || ||| Sbjct 6014056 CCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCCTCT 6014115 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG-TACA--TTCGAGA 563433 || ||||| || || |||||| || ||||| |||| || | || ||| || Sbjct 6014116 TTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAG---AAGCTTCAACTTCAAGG 6014172 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||||||| |||||||| || || || || ||||| Sbjct 6014173 GTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 >seq8 Length=7313927 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 ||||||||| || || |||||||| ||||||||| ||||||| || | ||||| || Sbjct 4423866 GATTTTTCTAGTCCTAACATTGCCAAGGAAATGCATGTTGGACACTTAAGGTCTACAATA 4423925 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAAT 930785 || ||||| | | | ||||| | ||||| | ||| | | || || | ||| Sbjct 4423926 ATCGGAGACAGTATCTCAAGATTGTTAGAATACTTAGGACATGACGTGTTGAGACTTAAT 4423985 Query 930786 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 ||| | ||||| ||||| ||||||||||||||||| || || Sbjct 4423986 CATGTAGGTGACTGGGGCACACAATTTGGTATGTTGATAGC 4424026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029146019529640