Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq33 104 4e-17 seq30 89.7 1e-12 >seq33 Length=3669922 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||||| ||| || || ||||| |||| | |||||| || || |||||||| ||||| Sbjct 215342 CTTGAGCAGCTTGACCTTGTCCTCGAGCCTGGAGATGCGCTCGAGCTTGCGCCGTCGGCA 215283 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| |||||||| | | ||| | ||| ||||| ||||||| Sbjct 215282 CTTGGAGGCGGCCACGCGGTTCCTCTGCCGCTTCCTCTCCAGTTTGATCTTCTCCTGGTT 215223 Query 241609 CTCCATGTCGATCGGAGACTTGGGT 241633 ||||||||||||||| ||| | ||| Sbjct 215222 CTCCATGTCGATCGGCGACATCGGT 215198 >seq30 Length=3857846 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 ||||||| || ||| || ||||| |||| |||||| |||||||| || | | | Sbjct 1771982 CTTCGTCTCGTGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 1772041 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | ||||| ||||| || |||||| |||| ||||||||| ||||| |||||||| || | Sbjct 1772042 TTAGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATG 1772101 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332 || | | || || | |||| ||| | ||||||| | ||||| | | Sbjct 1772102 CGACTACACGTTCGGGAAACGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAG 1772161 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||||||||| || || | ||||| || || Sbjct 1772162 CCTTCTTCTTGACACAAGGAAGTGTCTCAATCGC 1772195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931499777162240