Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 167 4e-36 seq14 131 3e-25 >seq3 Length=10655775 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| | ||||||||| || || | ||||| ||||| |||||||||||||||| Sbjct 2294636 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGAT 2294695 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| |||| || || || || ||||||| ||| |||||||| ||||| Sbjct 2294696 AAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGA 2294755 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||||||||||||||| | || | ||| ||| || || |||| || || Sbjct 2294756 ATGCCTTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACC 2294815 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || || ||||||||||| || || ||||| ||||| || ||||| Sbjct 2294816 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || || |||| |||||| |||| || || |||||||||||| Sbjct 2297517 ATACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCA 2297576 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || | |||||||||||| || || |||||||| ||||| || Sbjct 2297577 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGG 2297636 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| | ||| ||||||| || | ||| ||||| || || | |||| Sbjct 2297637 GGGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCA 2297696 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 | ||| | || || || || ||||| || ||||| ||||| || |||||| Sbjct 2297697 ATTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 2297747 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||||||||| | ||||| ||| ||||| || || | ||| | Sbjct 2297760 CGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCG 2297819 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| ||||| || |||||||| ||||| || || ||||||||||| Sbjct 2297820 TCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 2297879 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | |||| || || || || | ||||||||| | || || Sbjct 2297880 TCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATG 2297939 Query 193326 GTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 || || ||||| || ||||| ||||| || |||||| Sbjct 2297940 GTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 105 bits (116), Expect = 1e-17 Identities = 199/289 (69%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||||| || |||| ||| | || | || || |||||| || || Sbjct 2297973 ATTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCA 2298032 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || | || ||||| ||||| || || | ||| |||||||| Sbjct 2298033 GACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGT 2298092 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || | ||||| || || || || |||| |||| Sbjct 2298093 GGGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCA 2298152 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattttattagta 193370 ||||| |||||||| || || || || | || || || || || ||||| | | || Sbjct 2298153 ACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGGTGCT-CTA 2298211 Query 193371 aaataattattttaaataatatatac-tttatattttaacattatatta 193418 ||||| |||| | | |||| || |||| |||||| ||||||| Sbjct 2298212 CAATAA-AATTTCACGTTATATGGACGGTTATCTTTTAATCATATATTA 2298259 >seq14 Length=6127344 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || |||| | || || |||||||| | || | ||||| ||| || Sbjct 6013977 AATTTGCATTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTT 6014036 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | ||||| || || || ||||| || ||||| || || | || || Sbjct 6014037 GTAGTCGGAAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTG 6014096 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||||| || || ||||| ||||| || || | ||||| |||| || || || || Sbjct 6014097 GTCAGGAGGAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGA 6014156 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || |||||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct 6014157 AGCTTCAACTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | |||| || || ||| || ||||| || | ||||| | Sbjct 6014227 CGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCA 6014286 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| ||| ||||| ||||| || || | |||||||| ||||| || ||||||||| Sbjct 6014287 TCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTA 6014346 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | |||| ||||| || |||| || || || || || || Sbjct 6014347 TCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATG 6014406 Query 193326 GTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||| || || || ||||||||||| |||||||| Sbjct 6014407 GTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899622507251520