Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 149 9e-31 seq14 129 9e-25 seq30 87.8 3e-12 >seq3 Length=10655775 Score = 149 bits (164), Expect = 9e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| ||||||||||| | || ||||||| ||| Sbjct 2294862 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 2294803 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||||||||||||||||||||| ||||| || ||| Sbjct 2294802 GACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAA 2294743 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| || || |||||||| || ||| | |||||||| || |||||| Sbjct 2294742 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 2294683 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||| | || | || | |||||||| Sbjct 2294682 ATTCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 2294636 Score = 100 bits (110), Expect = 4e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || |||||||| || || || || || | ||||| || | |||| Sbjct 2298202 ATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 2298143 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || || |||||||||||||| || || || || Sbjct 2298142 GACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGATCAG 2298083 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||||| |||||| | ||||| || ||||| ||| Sbjct 2298082 CAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAAT 2298023 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || ||| || | || || ||||| || | ||||| Sbjct 2298022 AT-TCAAAAGGAATCCACTCTCCATTTGGTCCTCAGATT 2297985 >seq14 Length=6127344 Score = 129 bits (142), Expect = 9e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||||||||| || || | || || |||| |||| Sbjct 6014441 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 6014382 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||| || |||||||||||||| || |||||||| ||| Sbjct 6014381 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 6014322 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || ||||| || || ||| ||||||| | || || || || Sbjct 6014321 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 6014262 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || || | ||||||||| Sbjct 6014261 ATTCAGAAGGAATCTACGCTTCAT 6014238 >seq30 Length=3857846 Score = 87.8 bits (96), Expect = 3e-12 Identities = 145/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||||||| | ||| |||||||| || || | |||||| ||||| |||||||| || Sbjct 1773203 TTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAGTACATCTCAGAATGAATA 1773262 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC---G 18526 |||| || || || ||||| | ||| || | | || |||| | || | || | Sbjct 1773263 TTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGAAATTTTCACTTCTTGG 1773322 Query 18527 CTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCC 18586 || ||||| || | | |||||||||||| ||||| || | || || |||||||| Sbjct 1773323 CTG---AATCTCTCAATTAGATTCTCATTAACGATACCATCGGAAGCGGCAAAAAATGCT 1773379 Query 18587 AAAACATATTTAATGAAATGTTTTTCAT 18614 ||||||| || ||| |||| |||| Sbjct 1773380 AAAACATGAGAGATAAAACGTTTCTCAT 1773407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731846055137600