Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 131 3e-25 seq14 125 1e-23 seq4 109 1e-18 seq71 100 6e-16 >seq3 Length=10655775 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || |||||||| || | ||| | || | |||| ||||| |||||||| || ||| Sbjct 2294636 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGAT 2294695 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| |||| || | || || || || || |||| ||| |||||||| || || Sbjct 2294696 AAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGA 2294755 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||||||||||||||| || || || || | ||||| | ||| || Sbjct 2294756 ATGCCTTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACC 2294815 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||||||||| | ||||| | ||| |||||||| Sbjct 2294816 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | |||| ||| || || | ||||| || ||||||||| Sbjct 2297745 ATTCCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCA 2297804 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || | |||||| ||||||||||| |||||||| ||||| || Sbjct 2297805 GAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGG 2297864 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| ||||| || ||||| || | ||||| | || Sbjct 2297865 GGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCA 2297924 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||||| || || || | ||||| | ||| ||||||||| Sbjct 2297925 ACTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| | || ||||| || |||| || || |||||||| ||| Sbjct 2297517 ATACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCA 2297576 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | |||||| || || ||||| |||||||| ||||| || Sbjct 2297577 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGG 2297636 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| | ||| ||||| || ||||| |||| ||||||| || Sbjct 2297637 GGGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCA 2297696 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | ||| | || ||||| || || || | ||||| | ||| ||||||||| Sbjct 2297697 ATTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 2297747 Score = 123 bits (136), Expect = 5e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 || ||||| | ||| | || ||| || ||||| |||||||| || || ||| |||| || Sbjct 2297994 ACCAAATGGAGAGTGGATTCCTTTTGA-ATATTGTAATCAGACAAAGTACGTCCATCTTC 2298052 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || || || ||||||||||| || | ||| ||||||||||| || ||||||||||| || Sbjct 2298053 CAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTG 2298112 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || |||||| || || | || || | || ||||| ||||| ||||| || Sbjct 2298113 GATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTT 2298172 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || | || |||||||| Sbjct 2298173 CCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 >seq14 Length=6127344 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | ||| ||||| ||||| || | || | ||||| ||| || |||||||| Sbjct 6013530 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 6013589 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| |||| |||| |||||| || || || || | | ||||||||| ||||| Sbjct 6013590 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 6013649 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| ||||| || || ||||| ||||| || || | ||||| | ||| || Sbjct 6013650 AATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 6013709 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| || ||||||||||||||||| | ||||| | || || |||||| Sbjct 6013710 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013758 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | || | ||| | || | ||||| || || || || Sbjct 6013984 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCG 6014043 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || ||||| ||||||||||||||||| || | || || ||||| Sbjct 6014044 GAAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGA 6014103 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || ||| ||||||||| ||| | || || | ||| Sbjct 6014104 GGAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCA 6014163 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || |||||||| || | || || | ||| |||||||| Sbjct 6014164 ACTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||| | || | ||| | |||| || || || || || ||| Sbjct 6014212 ATGCCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCA 6014271 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || | ||| || ||||||||||| || | |||||||| || Sbjct 6014272 GAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGA 6014331 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || ||| ||| ||||| |||| || || | ||| Sbjct 6014332 GGAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCC 6014391 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| ||||| | ||||| | ||| || ||||| Sbjct 6014392 ACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | || | || | || | ||||| || || || || Sbjct 6013756 ATTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCG 6013815 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| ||||||||||| || || || || | | ||||||||| ||| Sbjct 6013816 GAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGT 6013875 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || ||||| ||||| || || | ||||| | ||| Sbjct 6013876 GGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCG 6013935 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || ||||||||||||||||| | ||||| | || || |||||| Sbjct 6013936 ACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 >seq4 Length=9433735 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| || || || ||| |||| |||| ||||| || || ||||| | || Sbjct 6954747 GATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATGAGTCG 6954688 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||||||| || || ||||| || || || || || ||| || ||||| |||| Sbjct 6954687 CTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATAGT 6954628 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | ||||| || || |||||||||||||| || | ||||| | || ||||| Sbjct 6954627 ATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAGATCTG 6954568 Query 192534 CAT 192536 ||| Sbjct 6954567 CAT 6954565 >seq71 Length=1082584 Score = 100 bits (110), Expect = 6e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 ||||| |||||||||| || || |||||||||||| || || |||| | || ||| Sbjct 572884 ACTAAGTGTAAAGTAGATTCCTTCTGGATATTATAATCCGACAAAGTTCTGCCGTCTTCC 572943 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCT 192435 ||||| |||||||||||||| ||||| || ||||| ||||| |||||| Sbjct 572944 AATTGCTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCT 572991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984444227688600