Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq14 125 1e-23 seq4 104 4e-17 seq71 93.3 8e-14 >seq3 Length=10655775 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||||||||| | ||| | || | |||| ||||| ||||||||| || ||| Sbjct 2294636 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGAT 2294695 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| ||| | || || | || || || || ||||||| ||| ||||| || || || Sbjct 2294696 AAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGA 2294755 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||||||||||||||| || || || || || ||||| | ||| || Sbjct 2294756 ATGCCTTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACC 2294815 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||||||||| | ||||| | || |||||||| Sbjct 2294816 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | ||| | || || |||||| ||||| || |||| ||| | || ||| Sbjct 2297994 ACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCATCTTCC 2298053 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | || || |||||||| || || | ||| || |||||||| || ||||||||||| || Sbjct 2298054 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGG 2298113 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || |||||| || || || || || | || ||||| ||||| ||||| || Sbjct 2298114 ATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 2298173 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || | ||| |||||||| Sbjct 2298174 CCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | |||| ||| || || | ||||| ||| |||||||| Sbjct 2297745 ATTCCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCA 2297804 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | |||||| |||||||| || |||||||| || || || Sbjct 2297805 GAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGG 2297864 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| || ||||| || || ||||| | || Sbjct 2297865 GGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCA 2297924 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | |||||||| || || || | ||||| | || ||||||||| Sbjct 2297925 ACTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || | || ||||| || |||| || || ||||||||| || Sbjct 2297517 ATACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCA 2297576 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| || || || || |||||||| || || || Sbjct 2297577 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGG 2297636 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| | ||| ||||| || ||||| ||||| ||||||| || Sbjct 2297637 GGGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCA 2297696 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | ||| | || ||||| || || || | ||||| | || ||||||||| Sbjct 2297697 ATTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 2297747 >seq14 Length=6127344 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||||||||| ||||| || | || | ||||| || || ||||| || Sbjct 6013530 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 6013589 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | || |||| |||||| || || ||||| | | |||||| || ||||| Sbjct 6013590 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 6013649 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||| ||||| || || ||||| ||||| || || || ||||| | ||| || Sbjct 6013650 AATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 6013709 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||| || ||||||||||||||||| | ||||| | ||| || |||||| Sbjct 6013710 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013758 Score = 113 bits (124), Expect = 8e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || || || || | || || | || ||||||||||| || || ||| Sbjct 6013795 TCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAA 6013854 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | | |||||| || ||||| ||||| ||||| || || ||||| ||||| || Sbjct 6013855 ATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTT 6013914 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || || ||||| | ||| ||||| || ||||||||||||||||| | ||||| | | Sbjct 6013915 TCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACG 6013974 Query 172059 AATATCTGCATT 172070 || || |||||| Sbjct 6013975 AAAATTTGCATT 6013986 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || | || | ||| | || | ||||| ||| || || || Sbjct 6013984 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCG 6014043 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| ||||| |||||||||||||| || || | || |||||||| Sbjct 6014044 GAAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGA 6014103 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || ||| ||||||||| ||| || || || | ||| Sbjct 6014104 GGAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCA 6014163 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || |||||||| || | || || | || |||||||| Sbjct 6014164 ACTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || | || || | || || | ||| || |||||||| || || | Sbjct 6014259 AATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACG 6014318 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || || || || |||||||||||||| || ||| ||| ||||| ||||| Sbjct 6014319 TTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGT 6014378 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | ||| || || || || |||||||| ||||| | ||||| | || || || Sbjct 6014379 GTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTG 6014438 Query 172067 CAT 172069 ||| Sbjct 6014439 CAT 6014441 >seq4 Length=9433735 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| || |||| ||| | || |||| ||||| || || || || | || | Sbjct 6954746 ATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATGAGTCGC 6954687 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || ||||| || || || || || ||| || ||||| |||||| Sbjct 6954686 TGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATAGTA 6954627 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||||| || || |||||||||||||| || | ||||| | ||| |||||| Sbjct 6954626 TCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAGATCTGC 6954567 Query 172068 AT 172069 || Sbjct 6954566 AT 6954565 >seq71 Length=1082584 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171828 TTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAA 171887 ||| ||||| | ||| |||| | || | ||||| |||||||||| || || Sbjct 572851 TTTCGTTTCTTGGCACCGCCTCGCAAGCGCAGCACTAAGTGTAAAGTAGATTCCTTCTGG 572910 Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| || |||| || |||| |||||||| ||||||||||| || ||||| Sbjct 572911 ATATTATAATCCGACAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTT 572970 Query 171948 TGTTGGTCAGGTGGTATTCCT 171968 || || || ||||| |||||| Sbjct 572971 TGCTGATCTGGTGGAATTCCT 572991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905103912928800