Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq20 105 2e-17 seq25 102 2e-16 seq3 91.5 4e-13 seq39 84.2 6e-11 >seq20 Length=5370898 Score = 105 bits (116), Expect = 2e-17 Identities = 170/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || ||||| ||||| || || ||||||| || || ||||||||| | Sbjct 784343 AAACAAATCTCTAACACGCCGGGCACCCTGACCAACGAGAATCTCATCAAATTCAGGGCC 784284 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | || || | ||||| |||| ||||| || || ||||| | ||| | | ||| || Sbjct 784283 TGCCACATGGAAGAATGGTACACCGGCTTCTCCAGCGACTGCACGCGCTAACAATGTTTT 784224 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGA 289265 |||||||| || || || |||| | |||||||| || | ||| | ||| || || Sbjct 784223 TCCTGTTCCTGGCGGACCGACTAACAATACTCCCTTCGGCAACTTTCCACCAAGGGCGGA 784164 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||| |||||| |||||||||||||||||| | | |||||| | |||||||| Sbjct 784163 ---AAATTTATCAGGGTTCTTTAAAAATTCTACAACATTCAGAAGTTCTTGCTTTGCCTC 784107 Query 289326 ATC 289328 ||| Sbjct 784106 ATC 784104 Score = 100 bits (110), Expect = 8e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 60143 GTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200 |||||||| || ||||||| || | ||||| ||||| ||| | || || |||| Sbjct 500797 GTGAAAATGTA--TCTCGGACTGGCAGAATCCTTTCCACCAGCAAGTCTTGTACCGAATT 500854 Query 60201 GTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAA 60260 | ||| | ||||| | ||||||||||| || || |||||||| || |||||| || Sbjct 500855 GACCGATGGGCTGTAGCAGATTAATGTTATTGCTACCCACGAAATTCTGCGCGAGATTAA 500914 Query 60261 CAATAG-CACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 | || | | |||| | | || ||||||||||||| |||||||||| | |||| || Sbjct 500915 CTATGGTCGCCATCAGAGACGTCT-CACCGTGATGATAAGCAGAATGTTCGGCAACAGAT 500973 Query 60320 CCACTGAATTGTGCGACTTTAATTTCG 60346 || ||||| |||||||| | |||| Sbjct 500974 CCCGCCAATTGCGCGACTTTCACTTCG 501000 >seq25 Length=4385159 Score = 102 bits (112), Expect = 2e-16 Identities = 170/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| || || |||||||||||||| |||||||| || || ||||| || ||| Sbjct 1129644 TCCATAGCTTTTATCAAACGACGCTGAATGTAACCAGTCTCAGCCGTCTTTACGGCGGTA 1129585 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||||||||| || || ||| | | ||| || ||| || || Sbjct 1129584 TCGATAAGACCTTCACGACCACCCATTGCGTGAAAGTAGAACTC-GGAGGGCGTGAGACC 1129526 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 ||| | | || ||||||| |||||||| | ||| || || ||| ||| | || Sbjct 1129525 AGCAAGATACGAATTCTCAACAAAACCACGGGACTCTGGTCCATAGTCATCCTTAATGAA 1129466 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 |||||||| || || || | || | || || || || || |||||||| || || Sbjct 1129465 ATGTGGCAGCGTTCTCTTACGGAAACCAAAGGGTATCCGTTTACCTTCAACGTTTTGTTG 1129406 Query 302814 TCC 302816 || Sbjct 1129405 GCC 1129403 Score = 98.7 bits (108), Expect = 3e-15 Identities = 123/164 (75%), Gaps = 11/164 (7%) Strand=Plus/Minus Query 303637 TGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGC-AACGTT 303695 ||||||||||| ||||| |||||||| ||||||||||||||| |||| | || | || Sbjct 1128549 TGTAAATTCATTTCATCCCCGTCAAAGTCAGCATTATACGGCGATGTG-CAGCTTAGATT 1128491 Query 303696 CATCCGGAAAGTA--TCAC-CCTGCATCATAACACGGGCTTTATGACACATCATAGACAT 303752 ||| || || ||| ||| ||| | ||||||| ||||| ||||||| ||| Sbjct 1128490 CATGCGAAATGTACTCCACGGAAGCACCTTAACACG------ATGACCCATCATACTCAT 1128437 Query 303753 TCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGT 303796 | |||||||| |||||||||||||| | ||| | ||||||| Sbjct 1128436 CTTATGTAGAGTAGGCTGACGATTGAAGATTACGAGATCACCGT 1128393 >seq3 Length=10655775 Score = 91.5 bits (100), Expect = 4e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTA-CCTGGATTTT 106982 ||| ||||| |||| |||||||| || |||| | || || ||||| || | || Sbjct 3669758 CATTCCATAAAAAAGTTTGAACTTCTTTCCATTCTTTTCTAT-AACTTCGCCCCCACATT 3669700 Query 106983 CATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTT 107042 ||||||| || ||||| | ||||| |||| || || || || || ||||||||||||| Sbjct 3669699 CATCGTGACCTGCAAATATTCCGCCTGCCATGACAAAGTCTGCGCCACCACCGAATGCTT 3669640 Query 107043 TAGCCATATCACCAGGGCAAGTAATTCCACCATC 107076 | || | ||| ||||| |||||| |||||| || Sbjct 3669639 TCGCTAAATCTCCAGGACAAGTACATCCACCGTC 3669606 >seq39 Length=2691647 Score = 84.2 bits (92), Expect = 6e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||| || ||||| || |||||||| || ||||||||| | || || ||| Sbjct 2411311 ATAGTCATACGAGAAGGGATAGCGTGAGGATTGATAATAATGTCGGGTGTAAGACCTTCA 2411370 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 | || ||| ||||| | ||| | || || || ||||| || || ||||||||||| Sbjct 2411371 GAAGAGAAAGGCATGT-CTTCTTGTCTGTACTGAATTCCACATGTACCTTTTTGTCCGTG 2411429 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| || || || || || || ||| || ||||| || | || | ||| || Sbjct 2411430 ACGCGACGCAAATTTGTCGCCGATTTGCGGAATACGTACACTGCGCACTCGGATCTTGCA 2411489 Query 252024 GAAGTTGTAACCATC 252038 ||| || || || || Sbjct 2411490 GAATTTATATCCTTC 2411504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471764119667732