Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14 170 2e-37 seq3 140 3e-28 seq4 129 5e-25 seq54 114 1e-20 seq71 89.7 5e-13 >seq14 Length=6127344 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||||||||| || || ||||| ||||| | Sbjct 6014213 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCT 6014154 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| |||||| ||||||||||||||||| || || ||||| || || Sbjct 6014153 GACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCAG 6014094 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || |||||| |||| || |||| | || || || ||| Sbjct 6014093 CAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAAC 6014034 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || || |||| |||| | || ||||| Sbjct 6014033 ATTCAGAAAGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGG 6013987 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || ||||| || || || || || ||||| | Sbjct 6014441 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 6014382 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 6014381 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 6014322 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || || || || |||||| |||| | || || || ||| Sbjct 6014321 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 6014262 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||||||| || || || | || |||| | || |||||| Sbjct 6014261 ATTCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTTCGTGGAGGC 6014214 >seq3 Length=10655775 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || | ||||| || || || || || ||||| || || Sbjct 2298205 ACCATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGCT 2298146 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | |||||| ||||||||| || |||||||| || || || ||| Sbjct 2298145 TCTGACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGAT 2298086 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || |||||||||||||| || || |||||||| ||| | | |||| ||||| Sbjct 2298085 CAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTAC 2298026 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||||||||| || || || ||||| | ||||||| || || Sbjct 2298025 AATATTCAAAAGGAATCCACTCTCCATTTGGTCCTCAGATTGCGTGGTGG 2297976 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || ||||||||||||||||| || || ||||| | Sbjct 2294862 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 2294803 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || ||||| |||||||| || |||||||||||| Sbjct 2294802 GACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAA 2294743 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || || ||||| |||||| | | | || || ||||| Sbjct 2294742 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 2294683 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| || ||||| ||||| ||| Sbjct 2294682 ATTCAGAAAGAATCTACACTTCAC 2294659 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || ||||| | ||||| || || | Sbjct 2297974 ATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATCA 2297915 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || ||||||||||||||||| || || ||||| Sbjct 2297914 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 2297855 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || ||||| || || || | | | || ||||||||| Sbjct 2297854 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAAC 2297795 Query 24884 ATTCAAAAGGAATCGACA 24901 ||||| || ||||| ||| Sbjct 2297794 ATTCAGAAAGAATCCACA 2297777 Score = 102 bits (112), Expect = 7e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || || || || ||| | ||| | || || | Sbjct 2297746 ATGCAGATTTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAATTGAGGCGTCA 2297687 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || ||| ||||||||||||| || || ||||| Sbjct 2297686 GACACTATCGAGAATGTCAAGGCCAAAATTCAATACAAAGAAGGAATCCCCCCGGATCAG 2297627 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | |||||||| ||||| ||||| || || ||| ||| | || | || || |||| Sbjct 2297626 CAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTCG-CACAC-TTTCTGACTATA 2297569 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | ||||| |||||||| || | || ||||| | || || || || || Sbjct 2297568 ATATTCAGAAGGAATCTACCTTGCATTTGGTTCTCCGTTTACGTGGTGG 2297520 >seq4 Length=9433735 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| || || |||||||| ||||| ||||| ||||| ||| Sbjct 6954562 ACCATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCC 6954621 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || |||||||| ||||| || ||||| || || ||| Sbjct 6954622 TCTGATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGAT 6954681 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| || | ||||| ||||| ||||||||||||||| | | |||| ||||| Sbjct 6954682 CAACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTAC 6954741 Query 24881 AACATTCAAAA 24891 ||||| ||||| Sbjct 6954742 AACATCCAAAA 6954752 >seq54 Length=1719504 Score = 114 bits (126), Expect = 1e-20 Identities = 214/311 (69%), Gaps = 14/311 (5%) Strand=Plus/Minus Query 138929 GATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAAT 138988 |||| || | ||| | ||| |||||||||| |||| |||||||||| ||| | || || Sbjct 1012014 GATTAGATGTTTTCGTTTCTTTGATAGGATAAAAGTTAACATCGATGACTTTATCTAGAT 1011955 Query 138989 TTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTG 139047 | || ||| | || | || || ||||| | || |||||| | || || Sbjct 1011954 TACGAGTGACGATTTTCG-CGACTGTTTTAAGTTTATCGAAATCGAAAGTTTTAG---TG 1011899 Query 139048 TCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACT 139107 || | |||| ||| |||||||| || || |||| ||||| || || ||| Sbjct 1011898 TCATTAACGA-----ACA----TGTTGACAGCGATAGATGCTAAATTGCATACAGCGACT 1011848 Query 139108 TCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCT 139167 || | || | |||||| | |||||| | ||||| || || || || | || ||| Sbjct 1011847 TCTCCAGGACCCGAGTATTCAATAATTTCAGTGCACAAGTTGCTGCATTTAACAGTGCCT 1011788 Query 139168 AAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCA 139227 | || || ||||| ||||||||| ||| |||||||||||||||||| ||||| ||| Sbjct 1011787 ATATGCTGATGATTCGATTTTCGGTTGCAATGATCTTTGTAAAGCATATAAGGTGTTCCA 1011728 Query 139228 GTTTCCACTTG 139238 ||||| ||||| Sbjct 1011727 GTTTCTACTTG 1011717 >seq71 Length=1082584 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 |||||| || || ||||| ||| | ||||||||||| || || || |||| || || Sbjct 572991 AGGAATTCCACCAGATCAGCAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAG 572932 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 || |||| |||||||| || || |||||||| || ||||||| ||| |||| |||| Sbjct 572931 AACTTTGTCGGATTATAATATCCAGAAGGAATCTACTTTACACTTAGTGCTGCGCTTGC- 572873 Query 24925 CGGAGGCGGAACTGAGCCAACGAAAGA 24951 ||||||| | || ||||||||| Sbjct 572872 --GAGGCGGTGCCAAG-AAACGAAAGA 572849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449881651130080