Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq30 226 2e-54 seq14 118 9e-22 >seq30 Length=3857846 Score = 226 bits (250), Expect = 2e-54 Identities = 325/456 (71%), Gaps = 4/456 (1%) Strand=Plus/Plus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 |||||| ||||||| ||| | ||||| | ||| || | | || ||| || | Sbjct 1780326 CGGCGGATTTTTCAAGATGTATGTGTTCAACTTGTGATTGCTCTCAAGAAGGCCATGGTG 1780385 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACGATGAGCTCA 34320 || || || ||||| ||||| | || || ||| || || || || || | || Sbjct 1780386 CCCACACGCCTTGCAACCCTGTGAAATCGTGCCCTTCTT--CGAACTGACCATTAATTCG 1780443 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || ||||| || || || |||| || | ||| | || || ||||||||||| |||||| Sbjct 1780444 GTTTCCGGATTATCGCAGGCCGGGCAAAGAACATATTTTCGAATGAAACCATCCAGCAGG 1780503 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 || |||||||| | ||||| ||||||||||||||||| |||||||| ||| | || Sbjct 1780504 TCTTGTAACTTTGTCGCATCGTGTGAGCCGTTGACGATGAAGCGTTCGTTCTTGAAGTCA 1780563 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | ||| || || ||||||| |||||| ||||| ||||| ||||| || | || ||||| Sbjct 1780564 AACTGTGTCTGAGCGCCCAACTCGCAACCGAAATACTTGGTCGGATATGTAGCAGGACGA 1780623 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 || | |||||| || | || |||||||||||| || || || || || || || || Sbjct 1780624 CCGATCGCCTTCGCTACATCCACCATGTTGACGATCACTGTTTTAATACCATTTCCTTTG 1780683 Query 34561 CCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620 ||||| ||||| || ||| |||||||| || || || || || || || |||||| Sbjct 1780684 CCTTCCACCTTTGCCTGGATCCGCGGCATCTTATAACGATAAAAAGCATCGCTGACATTG 1780743 Query 34621 CGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 || || ||||| || ||||||| ||| | | |||| Sbjct 1780744 CGATTGACGTTTACGCTCCCCATGGTGACCGATGTT 1780779 >seq14 Length=6127344 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | || || |||||||||||| ||||| || ||| | Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | ||||| || ||| |||||||| || | || ||||| Sbjct 6013698 A-GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 6013640 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || || ||||| ||||| |||| |||||| | | ||||||| Sbjct 6013639 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 6013580 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| ||||||||||| || | ||| | || ||| |||| || || || Sbjct 6013579 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 6013531 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | || || |||||||||||| ||||| || ||| | Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | ||||| || ||| |||||||| || | || ||||| Sbjct 6013926 A-GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 6013868 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || || ||||| |||| |||| |||||| | | || |||| Sbjct 6013867 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACA 6013808 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||| |||||||| ||| | ||| |||| | | || ||||| |||| Sbjct 6013807 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 6013757 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACG 110323 ||||| | |||||||| ||||| ||||| | || || |||||||| ||| | || | Sbjct 6014450 AGATTCATCATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTG 6014391 Query 110324 GAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 || || || ||| ||| | || ||| ||||| || |||||||| | || Sbjct 6014390 GAAGCTTCTGACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCT 6014331 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 ||||||||| | | || | ||| || || || || ||||||| |||||| | | Sbjct 6014330 CCAGATCAACAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCT 6014271 Query 110444 GATTACAACATTCAAAAAGAATCTACG 110470 || ||||||||||| || ||||||||| Sbjct 6014270 GACTACAACATTCAGAAGGAATCTACG 6014244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412827330646148