Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq14 116 2e-21 seq4 105 4e-18 seq3 104 2e-17 >seq14 Length=6127344 Score = 116 bits (128), Expect = 2e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| || || | | |||| || ||||||||||| || ||| Sbjct 6014251 TCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAG 6014310 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||||| || ||| | || | || || || || | || || |||||| | Sbjct 6014311 ATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTT 6014370 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| || || || |||| ||| ||||| ||||| |||||||| |||||| Sbjct 6014371 TCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACA 6014430 Query 34967 AAGATCTGCATGAT 34980 ||||| |||||||| Sbjct 6014431 AAGATTTGCATGAT 6014444 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| ||||| |||| ||| || ||||||||||| ||||| | Sbjct 6013985 TTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 6014044 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || |||| || || || || ||||||| ||||||||||| | | Sbjct 6014045 AAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAG 6014104 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | || || ||| || | |||| | ||| || || | Sbjct 6014105 GAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAA 6014164 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| || || || ||||| || ||||||||||||||||||||| Sbjct 6014165 CTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 6014214 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||||||||| ||| || ||||||||||| ||||| | Sbjct 6013757 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 6013816 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| |||| ||| || |||||||| ||||| || || || || | | Sbjct 6013817 AAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 6013876 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | ||||| || ||| | | || | || || |||| Sbjct 6013877 GAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGA 6013936 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || ||||| || || || || || ||||| Sbjct 6013937 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 >seq4 Length=9433735 Score = 105 bits (116), Expect = 4e-18 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || || ||||| || || || | |||| |||| ||||| || || ||||||||||| Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||| || || ||| |||| | ||||||||||| | || || ||||| || || Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCT 6954635 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || | ||| |||||| || || | ||| ||||| || ||||| ||||| || || | Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 34968 AGATCTGCATG 34978 ||||||||||| Sbjct 6954574 AGATCTGCATG 6954564 >seq3 Length=10655775 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| || |||||||||||||| || || || | || | || Sbjct 2297763 AGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCT 2297822 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||| || ||||||| || ||||| ||| | || | || || ||||| Sbjct 2297823 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCT 2297882 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||| | | |||| || ||||| || || | || |||||| Sbjct 2297883 TGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTC 2297942 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| || |||||||||||||| Sbjct 2297943 TTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 2297974 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| |||||||| || || |||| |||| || ||||| |||||||||||| Sbjct 2297556 TCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAG 2297615 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || || |||| | ||||| ||||| || Sbjct 2297616 ATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTATTGAATTTTGGCCTTGAC--AT 2297673 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || ||||| | || | || ||||||||||| || ||||| || | Sbjct 2297674 TCTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGA 2297733 Query 34965 CAAAGATCTGCAT 34977 |||| |||||||| Sbjct 2297734 CAAAAATCTGCAT 2297746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | ||| || ||||||| || | ||| ||||| ||||| || || || | Sbjct 2297974 TTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAG 2298033 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | || |||| ||||| |||||||| || ||||||| || ||||| || | | Sbjct 2298034 ACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTG 2298093 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || ||| ||| ||| | || | ||| ||||| | Sbjct 2298094 GGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAA 2298153 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||||||||||| || || | ||||| || || ||||||||| Sbjct 2298154 CTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 2298203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325681542835484