Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3 120 5e-22 seq14 113 7e-20 seq71 86.0 1e-11 >seq3 Length=10655775 Score = 120 bits (132), Expect = 5e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || ||||| ||||| | || || ||| | | Sbjct 2294861 TGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCAG 2294802 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || ||||||||| ||||||||||||||| |||||||||| Sbjct 2294801 ACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAAC 2294742 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || || || || |||| ||| | || ||| | || ||||||| Sbjct 2294741 AAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAATA 2294682 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| || | || | ||| | ||| | ||||| || Sbjct 2294681 TTCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 2294636 >seq14 Length=6127344 Score = 113 bits (124), Expect = 7e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| ||||| | || || ||| | | Sbjct 6013756 TGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCAG 6013697 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| ||||| ||||| || ||||| || |||||||| ||||||| Sbjct 6013696 ACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAAC 6013637 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || || |||||| | || ||| ||||| | | ||||| || | Sbjct 6013636 AGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAACA 6013577 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| || |||| ||||| |||||| | | |||||| Sbjct 6013576 TCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGGT 6013530 >seq71 Length=1082584 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| ||||| |||||| | || ||||| ||||| ||||| || || || Sbjct 572991 AGGAATTCCACCAGATCAGCAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAG 572932 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| || | ||||||||||| || || ||||| ||| | || ||||| | || || | Sbjct 572931 AACTTTGTCGGATTATAATATCCAGAAGGAATCTACTTTACACTTAGTGCTGCGCTTGCG 572872 Query 146252 AGGAGGT 146258 ||| ||| Sbjct 572871 AGGCGGT 572865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786138530401120