Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq14 168 5e-37 seq3 143 2e-29 >seq14 Length=6127344 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | |||||| |||| |||||||||||||||||| |||||||| || || | Sbjct 6013986 TCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGA 6014045 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | || || | ||||| |||||| | ||||| | |||||| || || || Sbjct 6014046 AAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGG 6014105 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||||||||||||| | || ||| ||| |||||| ||||||||| ||| || Sbjct 6014106 AATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAAC 6014165 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || |||||||| || || | || || ||||| |||||||| Sbjct 6014166 TTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 138 bits (152), Expect = 9e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | |||||| |||| ||||||||||||||||| |||||||| || || | Sbjct 6013758 TCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGA 6013817 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | ||||||||| || | |||| | || |||||||| || Sbjct 6013818 AAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 6013877 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| ||||||||||| || |||||| | || || |||| | ||||| ||| ||| | Sbjct 6013878 AATTCCCTCTTTGTCCTG-AATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGA 6013936 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || || || ||||| ||||| | ||||| || || || |||||| Sbjct 6013937 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || || || |||||||||||||| ||||| ||||| | || || | ||| || Sbjct 6013549 ACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCTTCC 6013608 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||||||||| || | |||| | || |||||||| ||||| ||||||||||| || Sbjct 6013609 AGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTG- 6013667 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | || || |||| | ||||| ||| ||| ||||| || || || ||||| Sbjct 6013668 AATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTT 6013727 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | ||||| || || || |||||| Sbjct 6013728 ACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013758 >seq3 Length=10655775 Score = 143 bits (158), Expect = 2e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| | ||||||||||| |||||||||||||| | || || || Sbjct 2297759 ACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCC 2297818 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||| |||||| | |||||||| |||||||| || || || || ||||| Sbjct 2297819 GTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 2297878 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | |||||| |||| | ||||| || || ||||| | || | Sbjct 2297879 GTCTTG-AATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAA 2297937 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || | |||||| ||||| ||||||||| Sbjct 2297938 TGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 138 bits (152), Expect = 9e-28 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || |||||||| | || ||||| || ||||| ||||| || | || |||||| Sbjct 2297529 AAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGA 2297588 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || |||||||| || || | |||||||| ||||||||||| || || || ||| Sbjct 2297589 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCT 2297648 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 |||| ||| |||||| | |||||| | || | |||||| || || | ||| | || Sbjct 2297649 TTGTATTG-AATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATTTCCAACGT 2297707 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || | |||||| ||||| ||||||||| Sbjct 2297708 GATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 2297747 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| | || |||||||| || |||||||| |||||||| || ||||| | Sbjct 2297975 TCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGA 2298034 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || || || |||||| | ||||| | |||||||| || || Sbjct 2298035 CAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGG 2298094 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| || || | ||| ||| || | || | ||||||||| || || Sbjct 2298095 GATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAAC 2298154 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||||| || || || || || || || || || |||||||| Sbjct 2298155 TTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385205885379876